Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase Mag1|Schizo...    27   3.3  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    27   5.8  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   7.7  
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    26   7.7  

>SPAPB24D3.04c |mag1||DNA-3-methyladenine glycosylase
           Mag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 228

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 95  IYKQSHVNSMFKFGENWYTWSTEKRTDGSK 124
           + K S + + F+    WY W T K  D +K
Sbjct: 192 VLKHSEICAPFRTAAAWYLWKTSKLADYTK 221


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 115 STE-KRTDGSKATNYYICYDEPKRCDDIG-WERTDTLPKCAFEIDSLTPDDRACINSFGE 172
           STE K+ DGS      +    PK+ D     ++ +T    + E DS++ +D+   +S  E
Sbjct: 9   STEVKKKDGSMNKRVKVA-KLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNE 67

Query: 173 EHHLHYGGFCDGAEQMKVSEMVRS 196
                + GF + A +    E   S
Sbjct: 68  SEDEDFAGFGESASENDELESAES 91


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 7/26 (26%), Positives = 21/26 (80%)

Query: 20  VNDKPVVIDQEDSRVDDEDTSRTESW 45
           +ND P++++++D  +D ++++R ++W
Sbjct: 431 LNDSPLLLNKKDILLDMKESTRQKNW 456


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 8/25 (32%), Positives = 19/25 (76%)

Query: 314 KDNYKVKERNESGYTSRREDTKTKK 338
           ++NY +K++NE G+ S++E+  + +
Sbjct: 79  ENNYTLKKKNEEGFLSQQENKSSNQ 103


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,667,381
Number of Sequences: 5004
Number of extensions: 65287
Number of successful extensions: 177
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 4
length of query: 382
length of database: 2,362,478
effective HSP length: 74
effective length of query: 308
effective length of database: 1,992,182
effective search space: 613592056
effective search space used: 613592056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)