Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        32   0.68 
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_23563| Best HMM Match : rve (HMM E-Value=3.3e-25)                   31   2.1  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.4  
SB_24580| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   8.4  

>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 32.3 bits (70), Expect = 0.68
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 151 KCAFEIDSLTPDDRACINSFGEEHHLHYGG 180
           KC  E +SL+  +R+C ++    HHLHY G
Sbjct: 238 KCKLENNSLSVFNRSCSDNQSGTHHLHYDG 267


>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 3/119 (2%)

Query: 229 DDEEECFVTIEYRIHHDRITFSLHEPTRGQTFKSALKRE-VPSEDENKVSTTTETRQRSV 287
           +D EE F  IE     +   +++ E  R    +  ++ E  PS DE+          + V
Sbjct: 357 NDNEE-FEEIEKNPPVEPAEYTISEEKRKDLLRQIIEEESTPSSDEDDGDYEEPDDDQPV 415

Query: 288 HRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVKERNESGYTSRREDTKTK-KFRVRPKT 345
           H S   V E+              E +D  +++E+ +      ++ TK K K +++ KT
Sbjct: 416 HPSHYSVPEDEITSADEDEDDDKDEKEDEDELEEKEDWSKNKTKKKTKEKTKEKIKSKT 474


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 23/116 (19%), Positives = 40/116 (34%)

Query: 265 KREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVKERNE 324
           K E     ++K     E+++R  H  K    E                 +   + K+R +
Sbjct: 184 KEERKKRHKDKKKKREESKERRRHSDKAEKSERKREKEEKKRDKSEKRERSRERSKDRKK 243

Query: 325 SGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKNEITFKEDISNDT 380
              +S+  D +  + R R ++          R DSG +  R         D SND+
Sbjct: 244 DRDSSKHRDKEKDRSRERDRSGSKHRSKDRTRRDSGDSHERQHRPQRSGSDASNDS 299



 Score = 29.1 bits (62), Expect = 6.3
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 272 DENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVKERNESGYTSR- 330
           ++N+   T E R++  H+ KK  REE              E K   + K+R++S    R 
Sbjct: 176 EKNETGETKEERKKR-HKDKKKKREESKERRRHSDKAEKSERKREKEEKKRDKSEKRERS 234

Query: 331 REDTKTKK 338
           RE +K +K
Sbjct: 235 RERSKDRK 242


>SB_23563| Best HMM Match : rve (HMM E-Value=3.3e-25)
          Length = 640

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 276 VSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVKERNESGYTSR---RE 332
           ++T  ETR++S  R+  +++ E                    K +E ++    ++   RE
Sbjct: 554 INTADETREKSCERNPSMLKPEGSDQPTQSASEATEISDSTDKTEEESKETANAKPQPRE 613

Query: 333 DTKTKKFRVRPK 344
           D +T + R RPK
Sbjct: 614 DQETPELRERPK 625


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)

Query: 134  EPKRC-----DDIGWERTDTLPKCAFEIDS 158
            EP+RC     D   WE  DTLPK  F  D+
Sbjct: 3240 EPQRCEPDFTDSFTWEGPDTLPKVTFSDDT 3269


>SB_24580| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 366

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 91  LFPLIYKQSHVNSMFKFGENW 111
           +FP I+KQ  V  +FK G++W
Sbjct: 15  IFPTIWKQVRVTPVFKAGDHW 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,466,742
Number of Sequences: 59808
Number of extensions: 501503
Number of successful extensions: 1134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 10
length of query: 382
length of database: 16,821,457
effective HSP length: 83
effective length of query: 299
effective length of database: 11,857,393
effective search space: 3545360507
effective search space used: 3545360507
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)