Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC108733-1|AAI08734.1|  685|Homo sapiens Unknown (protein for IM...    31   9.0  
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    31   9.0  

>BC108733-1|AAI08734.1|  685|Homo sapiens Unknown (protein for
           IMAGE:3877752) protein.
          Length = 685

 Score = 30.7 bits (66), Expect = 9.0
 Identities = 19/100 (19%), Positives = 41/100 (41%)

Query: 245 DRITFSLHEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXX 304
           +++     +P + +T  S  ++EVPS++E          +++     K  +E+       
Sbjct: 584 EKVMVKKDKPVKTETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETK 643

Query: 305 XXXXXXXEGKDNYKVKERNESGYTSRREDTKTKKFRVRPK 344
                  E K+  K +   +   T  +++ K KK  V+ K
Sbjct: 644 VKPEDKKEEKEKPKKEVAKKEDKTPIKKEEKPKKEEVKKK 683


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
            marker CA125 protein.
          Length = 22152

 Score = 30.7 bits (66), Expect = 9.0
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 20   VNDKPVVIDQEDSRVDDEDTSRTESW-DRKKGIDIT 54
            +N+K +  +Q+ SR  DE  S T SW D+  G DIT
Sbjct: 3405 LNNKIMAAEQQTSRSVDEAYSSTSSWSDQTSGSDIT 3440


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,676,754
Number of Sequences: 224733
Number of extensions: 1877163
Number of successful extensions: 3615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3614
Number of HSP's gapped (non-prelim): 2
length of query: 382
length of database: 73,234,838
effective HSP length: 91
effective length of query: 291
effective length of database: 52,784,135
effective search space: 15360183285
effective search space used: 15360183285
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)