GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2F8N8 Cluster: Putative uncharacterized protein; n=2; ...    38   0.44 
UniRef50_Q5GS98 Cluster: Transcription elongation factor, NusA; ...    36   1.3  
UniRef50_UPI00006A0DD8 Cluster: Leiomodin-1 (Leiomodin, muscle f...    35   3.1  
UniRef50_Q86AP2 Cluster: Similar to Plasmodium falciparum. Splic...    34   5.4  
UniRef50_Q9W0B0 Cluster: CG7971-PC, isoform C; n=7; Endopterygot...    33   9.4  

>UniRef50_A2F8N8 Cluster: Putative uncharacterized protein; n=2;
            Eukaryota|Rep: Putative uncharacterized protein -
            Trichomonas vaginalis G3
          Length = 1996

 Score = 37.9 bits (84), Expect = 0.44
 Identities = 31/130 (23%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 253  EPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXE 312
            E    + F+   K E P EDENK  T  ET++ +   +K+  +EE              E
Sbjct: 889  ETKEEEPFEDETKEEEPFEDENKEETKEETKEENKDENKEETKEE-----EPFEDETKEE 943

Query: 313  GKDNYKVKERNESGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKNEITF 372
             KD  K +E  E      +E+TK +      +             D      + +N+   
Sbjct: 944  NKDENK-EETKEETKDKSKEETKEETKDETKEEEPFDGETKEENKDENKEENKDENKEET 1002

Query: 373  KEDISNDTSE 382
            KE+   +T E
Sbjct: 1003 KEENKEETKE 1012



 Score = 35.5 bits (78), Expect = 2.3
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)

Query: 253  EPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSK-KIVREEXXXXXXXXXXXXXX 311
            E T+ +T K   K E P EDENK  T  ET++      + K   +E              
Sbjct: 1060 EETKEET-KEETKEEEPFEDENKEETKEETKEDEPFEDETKEENKEEEPFEDENKEETKE 1118

Query: 312  EGKDNYKVKERNESGYTSRREDTKTKK 338
            + KD+Y+ + ++E+     +ED  T K
Sbjct: 1119 DNKDDYEEETKHENN-VQEQEDEPTNK 1144


>UniRef50_Q5GS98 Cluster: Transcription elongation factor, NusA;
           n=10; Rickettsiales|Rep: Transcription elongation
           factor, NusA - Wolbachia sp. subsp. Brugia malayi
           (strain TRS)
          Length = 520

 Score = 36.3 bits (80), Expect = 1.3
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 164 RACINSFGEEHHLHYGGFCDGAEQMKVSEMVRSC-GPRIRSLWRFVRVGRRPANAAKPAD 222
           R+ +  F  + ++   G C G +  ++  ++    G +I  +  F  +G+    A  PA+
Sbjct: 255 RSKVAVFSPDKNIDPVGACVGVKGERIKAIIHELNGEKIDVVHYFSDLGQFVIKAITPAE 314

Query: 223 VNSLICDDEEECFVTIEYRIHHDRITFSLHEPTRGQTFKSAL---KREVPSEDENKVSTT 279
           V+ +I D+ E C   +E  +  D+++ ++ +  +     S L   K E+ S  +      
Sbjct: 315 VSKVIIDESENC---VELIVAEDQLSLAIGKKGQNVRLASELIGWKIEILSTQQESERRN 371

Query: 280 TETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVKE 321
            E  Q S   ++ +  EE              E   N  +KE
Sbjct: 372 RELSQCSALFAEALNLEEIMGQLLVTEGFSSVEDISNASIKE 413


>UniRef50_UPI00006A0DD8 Cluster: Leiomodin-1 (Leiomodin, muscle
           form) (64 kDa autoantigen D1) (64 kDa autoantigen 1D)
           (64 kDa autoantigen 1D3) (Thyroid-associated
           ophthalmopathy autoantigen) (Smooth muscle leiomodin)
           (SM-Lmod).; n=2; Xenopus tropicalis|Rep: Leiomodin-1
           (Leiomodin, muscle form) (64 kDa autoantigen D1) (64 kDa
           autoantigen 1D) (64 kDa autoantigen 1D3)
           (Thyroid-associated ophthalmopathy autoantigen) (Smooth
           muscle leiomodin) (SM-Lmod). - Xenopus tropicalis
          Length = 555

 Score = 35.1 bits (77), Expect = 3.1
 Identities = 36/174 (20%), Positives = 66/174 (37%), Gaps = 4/174 (2%)

Query: 209 RVGRRPANAAKPADVNSLICDDEEECFVTIEYRIHHDRITFSLHEPTRGQTFKSALKREV 268
           ++ +R A   K      +  + E++   + E R      T  L EP   +T K+ LK+E 
Sbjct: 71  KLAQRQATTEKEKSTEKVKDNKEKKVEESKESRTKDQNRTKKLEEPKDTKTQKTDLKKET 130

Query: 269 PSEDENKVSTTTE--TRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVK-ERNES 325
           P   +++VS   E   ++++     K   E                 K N ++K ER+  
Sbjct: 131 PKPKDDRVSKMRERFKQEKTSSTVDKEKPERILSKKPSEEKAMKTTEKGNTELKAERDVK 190

Query: 326 GYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKNEITFKEDISND 379
                 E+   +K +V  K+           ND     + + NE+  KE +  +
Sbjct: 191 DKKREAEEKPPEKCQVPEKSLKKPEKPEGLSNDKKVIGKNLPNELN-KESLQQE 243


>UniRef50_Q86AP2 Cluster: Similar to Plasmodium falciparum. Splicing
           factor, putative; n=1; Dictyostelium discoideum|Rep:
           Similar to Plasmodium falciparum. Splicing factor,
           putative - Dictyostelium discoideum (Slime mold)
          Length = 323

 Score = 34.3 bits (75), Expect = 5.4
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 2/118 (1%)

Query: 261 KSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVK 320
           KS  +RE   E E K   ++ +R RS  RS+   +++                +D Y+ K
Sbjct: 183 KSKRRREKERERE-KYRDSSSSRSRSRSRSRSNDKKKERKQRDRSKSRSRSTSRDRYRSK 241

Query: 321 ERNESGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSR-RIKNEITFKEDIS 377
           +      T R    + ++ R R ++          RN   Y  R R ++    K D S
Sbjct: 242 DNKRDKQTKRDRSGERERDRSRSRSRSRSKSRSRERNRDNYRERNRSRDRSNKKRDRS 299


>UniRef50_Q9W0B0 Cluster: CG7971-PC, isoform C; n=7;
           Endopterygota|Rep: CG7971-PC, isoform C - Drosophila
           melanogaster (Fruit fly)
          Length = 1107

 Score = 33.5 bits (73), Expect = 9.4
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 252 HEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXX 311
           H P   Q  +S  KR   S D +K +  +  RQRS  R +   RE               
Sbjct: 509 HRPKDEQ--QSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSK 566

Query: 312 EG---KDNYKVKERNESGYTSRREDTKTKKFRVRPK 344
           EG   KD   +KER  S    R ++ +  K + R +
Sbjct: 567 EGQLSKDRQGLKERQRSNERKRSKERQPSKEKQRSR 602


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,731,483
Number of Sequences: 1657284
Number of extensions: 14787881
Number of successful extensions: 31975
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 31959
Number of HSP's gapped (non-prelim): 15
length of query: 382
length of database: 575,637,011
effective HSP length: 102
effective length of query: 280
effective length of database: 406,594,043
effective search space: 113846332040
effective search space used: 113846332040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 73 (33.5 bits)