GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0051 + 12863978-12864476,12864575-12864674,12865567-128656...    30   3.6  
08_02_1013 + 23554996-23555139,23555456-23555541,23556375-235563...    29   4.7  
12_02_0814 - 23410278-23411854,23411933-23412166,23412688-234127...    29   6.2  
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    29   8.2  
05_05_0236 - 23517512-23517682,23519436-23519516,23519685-235198...    29   8.2  

>11_04_0051 +
           12863978-12864476,12864575-12864674,12865567-12865657,
           12866114-12866176,12866364-12866549,12866994-12867024,
           12867054-12867502
          Length = 472

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 148 TLPKCAFEIDSLTPDDRACINSFGEEHHLHYGGFCDGAEQMKVSEMVRSCGPRIRSL 204
           +LP  A  ++++   + AC   FG E   H GGF  G   M V  +V  C   I SL
Sbjct: 277 SLPLAAHLVEAVV--EAACGGGFGGEVAAHGGGF-GGEVAMSVGNLVSWCTATIESL 330


>08_02_1013 +
           23554996-23555139,23555456-23555541,23556375-23556399,
           23556655-23556711,23556795-23556852,23557767-23558614,
           23558862-23558921
          Length = 425

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 258 QTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNY 317
           + F  A+K+E+ S   +   +T E        S K VR++              + KD +
Sbjct: 96  EAFHEAVKKEL-SHVNSPCDSTEEAGNLKAKTSSKKVRKQKGLKESPASEHMGEDTKDQH 154

Query: 318 KVKERNESGYTSRREDTKTKKFRVR 342
             ++  E GYT+       K  R R
Sbjct: 155 SAEQHQELGYTATTGVATRKGRRTR 179


>12_02_0814 -
           23410278-23411854,23411933-23412166,23412688-23412725,
           23412872-23412948
          Length = 641

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 173 EHHLHYGGFCDGAEQMKVSEMVRSCGPRIRSLWRFVRVGRRPANA 217
           +HHL  GG  D  + +  S ++   G   R+ WR + + R   NA
Sbjct: 66  DHHLIAGGHSDAGDHLPTSSLMSQLG---RTSWRDIVLSRPAVNA 107


>09_01_0175 -
           2509014-2509064,2509389-2509490,2509603-2509729,
           2509852-2511564,2512335-2512424,2512533-2512801,
           2513118-2513687,2513703-2514065
          Length = 1094

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)

Query: 222 DVNSLICDDEEECFVTIEYRIHHDRITFSLHE--PTRGQTFKSALKREVPSEDENKVSTT 279
           D  +L+  ++EE    IE++   D + F  HE    RG+  K          D + + + 
Sbjct: 848 DTFNLVIREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISDKCRDFDVIVSR 907

Query: 280 TETRQRSVHRSKKIVRE--EXXXXXXXXXXXXXXEGKDNYKVKERNESGYTSRREDTKTK 337
            E   + VHR++  ++E  +              + K  + + +  E G++S    +K K
Sbjct: 908 LEQALQHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSS--SISKEK 965

Query: 338 KF 339
           +F
Sbjct: 966 EF 967


>05_05_0236 -
           23517512-23517682,23519436-23519516,23519685-23519891,
           23519987-23520164,23520250-23520284,23520725-23520826,
           23520908-23520964,23521236-23521325
          Length = 306

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 245 DRITFSLHEPTRGQTFKSALKREVPSEDENKVSTTTETRQRS---VHRSKKIVREEXXXX 301
           D + F L EP R +     L+R+V   D NK+S    TRQR    V    K V E+    
Sbjct: 210 DSLVFELAEPDRFKYL--VLERQV---DSNKISVILRTRQRQRFWVIYIIKAVDEDANES 264

Query: 302 XXXXXXXXXXEGKDNYKVKERNESGYTSRREDTKTKKFRVR 342
                     +        E+++S      + TK +K R R
Sbjct: 265 EPADEEAIGDKDTSTEDAAEQDDSPNAEPLKGTKRRKLRGR 305


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,784
Number of Sequences: 37544
Number of extensions: 396727
Number of successful extensions: 849
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 14,793,348
effective HSP length: 83
effective length of query: 299
effective length of database: 11,677,196
effective search space: 3491481604
effective search space used: 3491481604
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)