GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058638-1|AAL13867.1|  492|Drosophila melanogaster LD33732p pro...    33   0.50 
AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,...    33   0.50 
AE014296-325|AAZ66051.1|  849|Drosophila melanogaster CG7971-PD,...    33   0.50 
AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,...    33   0.50 

>AY058638-1|AAL13867.1|  492|Drosophila melanogaster LD33732p
           protein.
          Length = 492

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 252 HEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXX 311
           H P   Q  +S  KR   S D +K +  +  RQRS  R +   RE               
Sbjct: 152 HRPKDEQ--QSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSK 209

Query: 312 EG---KDNYKVKERNESGYTSRREDTKTKKFRVRPK 344
           EG   KD   +KER  S    R ++ +  K + R +
Sbjct: 210 EGQLSKDRQGLKERQRSNERKRSKERQPSKEKQRSR 245


>AE014296-326|AAF47543.2| 1062|Drosophila melanogaster CG7971-PA,
           isoform A protein.
          Length = 1062

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 252 HEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXX 311
           H P   Q  +S  KR   S D +K +  +  RQRS  R +   RE               
Sbjct: 509 HRPKDEQ--QSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSK 566

Query: 312 EG---KDNYKVKERNESGYTSRREDTKTKKFRVRPK 344
           EG   KD   +KER  S    R ++ +  K + R +
Sbjct: 567 EGQLSKDRQGLKERQRSNERKRSKERQPSKEKQRSR 602


>AE014296-325|AAZ66051.1|  849|Drosophila melanogaster CG7971-PD,
           isoform D protein.
          Length = 849

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 252 HEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXX 311
           H P   Q  +S  KR   S D +K +  +  RQRS  R +   RE               
Sbjct: 509 HRPKDEQ--QSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSK 566

Query: 312 EG---KDNYKVKERNESGYTSRREDTKTKKFRVRPK 344
           EG   KD   +KER  S    R ++ +  K + R +
Sbjct: 567 EGQLSKDRQGLKERQRSNERKRSKERQPSKEKQRSR 602


>AE014296-324|AAF47542.2| 1107|Drosophila melanogaster CG7971-PC,
           isoform C protein.
          Length = 1107

 Score = 33.5 bits (73), Expect = 0.50
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 252 HEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXX 311
           H P   Q  +S  KR   S D +K +  +  RQRS  R +   RE               
Sbjct: 509 HRPKDEQ--QSVDKRRDRSTDRSKENQRSNERQRSKERQRSKERERSKDRQRSRERRRSK 566

Query: 312 EG---KDNYKVKERNESGYTSRREDTKTKKFRVRPK 344
           EG   KD   +KER  S    R ++ +  K + R +
Sbjct: 567 EGQLSKDRQGLKERQRSNERKRSKERQPSKEKQRSR 602


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,724
Number of Sequences: 52641
Number of extensions: 695910
Number of successful extensions: 1689
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1689
Number of HSP's gapped (non-prelim): 4
length of query: 382
length of database: 24,830,863
effective HSP length: 86
effective length of query: 296
effective length of database: 20,303,737
effective search space: 6009906152
effective search space used: 6009906152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)