Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
(382 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93389-6|CAI79177.1| 212|Caenorhabditis elegans Hypothetical pr... 36 0.063
Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical pr... 33 0.34
AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3 ... 33 0.34
AF067220-6|AAC16980.2| 303|Caenorhabditis elegans Hypothetical ... 32 0.78
Z82285-3|CAD56246.1| 573|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z93385-5|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 29 4.1
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 29 4.1
Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical pr... 28 9.6
U23528-6|AAK31385.1| 216|Caenorhabditis elegans Hypothetical pr... 28 9.6
>Z93389-6|CAI79177.1| 212|Caenorhabditis elegans Hypothetical
protein T13F3.8 protein.
Length = 212
Score = 35.5 bits (78), Expect = 0.063
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 261 KSALKREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXX-EGKDNYKV 319
K A K++ P ++E K + ++ K+ V+EE E K++ +
Sbjct: 82 KEAEKKDEPKKEEEKKEEEKKKEEKKEEEKKEEVKEEEKKDDSKRDEKKKDGEKKEDDEN 141
Query: 320 KERNESGYTSRREDTKTKKFRVRPK 344
KE NE ++ED K KK + P+
Sbjct: 142 KEDNEKKKEEKKEDEKPKKEEIVPQ 166
>Z81593-2|CAB04737.1| 260|Caenorhabditis elegans Hypothetical
protein T20B3.2 protein.
Length = 260
Score = 33.1 bits (72), Expect = 0.34
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 222 DVNSLICDDEEECFVTIEYRIHH-----DRITFSLHEPTRGQTFKSALKREVPSEDENKV 276
D+ + +C EEE F I + + +++T +++ RG+ K LK+ S+ +NK
Sbjct: 113 DMFARVCALEEEKF-DINFGVSQTEAEINQLTIQVND-LRGKFVKPTLKKV--SKYDNKF 168
Query: 277 STTTETRQRSVHRSK-KIVREEXXXXXXXXXXXXXXEGKDNYKVKERNE 324
++ E +++S R+ K+V++E +GK + KE+ E
Sbjct: 169 KSSGEVKEKSNFRNNLKVVKKETDLDEIMAKKKGTADGKPEWSKKEKKE 217
>AB107359-1|BAD89380.1| 260|Caenorhabditis elegans troponin I 3
protein.
Length = 260
Score = 33.1 bits (72), Expect = 0.34
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 222 DVNSLICDDEEECFVTIEYRIHH-----DRITFSLHEPTRGQTFKSALKREVPSEDENKV 276
D+ + +C EEE F I + + +++T +++ RG+ K LK+ S+ +NK
Sbjct: 113 DMFARVCALEEEKF-DINFGVSQTEAEINQLTIQVND-LRGKFVKPTLKKV--SKYDNKF 168
Query: 277 STTTETRQRSVHRSK-KIVREEXXXXXXXXXXXXXXEGKDNYKVKERNE 324
++ E +++S R+ K+V++E +GK + KE+ E
Sbjct: 169 KSSGEVKEKSNFRNNLKVVKKETDLDEIMAKKKGTADGKPEWSKKEKKE 217
>AF067220-6|AAC16980.2| 303|Caenorhabditis elegans Hypothetical
protein C33E10.8 protein.
Length = 303
Score = 31.9 bits (69), Expect = 0.78
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 86 HP--NELLFPLIYKQSHVNSMFKFGENWYTWSTEKRTDGSKATNYYICYDEPKRCDDIGW 143
HP EL L + VN MFK+G N W KR+ N+ + +D+ D +
Sbjct: 48 HPIAEELYIGLHFYGLFVNLMFKYGPNVKIWMHPKRSVKISMDNHEVVFDKRLTADQLFK 107
Query: 144 ERTDTLPKCAFEIDSLTPDDRACINSFGE 172
+ L K I ++T C F E
Sbjct: 108 KLAPFLRKLPKSI-TITESSDDCFYFFRE 135
>Z82285-3|CAD56246.1| 573|Caenorhabditis elegans Hypothetical
protein T28F3.4a protein.
Length = 573
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 260 FKSALKREVPSEDENKVSTTTETRQRSVHRSKK 292
F+SAL E+P N+++ TTE RQR R ++
Sbjct: 536 FQSALDMEIPEIQLNEITLTTEERQRFQRRIRE 568
>Z93385-5|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 29.5 bits (63), Expect = 4.1
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 253 EPTRGQTFKSALKREVPSEDE----NKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXX 308
E + G + +K ++ S+DE ++ TT + ++ R +K R++
Sbjct: 119 EESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQK--RKEKERRKKEKREKKERKEK 176
Query: 309 XXXEGKDNYKVKERNESGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKN 368
E K+N K+KE ++ + +D K KK + R + D+G K
Sbjct: 177 KRLE-KENRKIKEEDDED-SDDEDDEKAKK-KKRKSKGAEKSKPSTSKKDAGGKKEPPKK 233
Query: 369 EITFKEDISN 378
++ +EDI +
Sbjct: 234 KVKKEEDIED 243
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/80 (21%), Positives = 33/80 (41%)
Query: 265 KREVPSEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEGKDNYKVKERNE 324
K+E ++++ + S + + + +K E+ E KD + KE+ E
Sbjct: 100 KKENENDEKKEKSKDDKKEESKEDKKEKTKTEDNEGKNEEKKKEKKEEKKDEKEKKEKTE 159
Query: 325 SGYTSRREDTKTKKFRVRPK 344
+E TK +K + PK
Sbjct: 160 DDKEKEKEKTKEEKVKEDPK 179
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 29.5 bits (63), Expect = 4.1
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 253 EPTRGQTFKSALKREVPSEDE----NKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXX 308
E + G + +K ++ S+DE ++ TT + ++ R +K R++
Sbjct: 119 EESEGDVSEEDVKPQIHSDDELEEEDEAPTTDDEEEQK--RKEKERRKKEKREKKKRKEK 176
Query: 309 XXXEGKDNYKVKERNESGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKN 368
E K+N K+KE ++ + +D K KK + R + D+G K
Sbjct: 177 KRLE-KENRKIKEEDDED-SDDEDDEKAKK-KKRKSKGAEKSKPSTSKKDAGGKKEPPKK 233
Query: 369 EITFKEDISN 378
++ +EDI +
Sbjct: 234 KVKKEEDIED 243
>Z81123-4|CAB03367.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 28.3 bits (60), Expect = 9.6
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 220 PADVNSLICDDEEECFVTIEYRIHHDRITFSLHEPTRGQTFKSALKRE-----VPSEDEN 274
P + LI ++EE + IE + + L+ PTR ++A++ SED
Sbjct: 684 PKIKSKLILPEDEEVLLKIENSVKEQLKSTELNGPTRALINQAAVELSRCETCSDSEDNK 743
Query: 275 KVSTTTETRQRSVHRSKK 292
KV+ E + +SKK
Sbjct: 744 KVNEEEELWSKKKEKSKK 761
>Z54281-8|CAA91051.2| 986|Caenorhabditis elegans Hypothetical
protein F46C5.6 protein.
Length = 986
Score = 28.3 bits (60), Expect = 9.6
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 220 PADVNSLICDDEEECFVTIEYRIHHDRITFSLHEPTRGQTFKSALKRE-----VPSEDEN 274
P + LI ++EE + IE + + L+ PTR ++A++ SED
Sbjct: 684 PKIKSKLILPEDEEVLLKIENSVKEQLKSTELNGPTRALINQAAVELSRCETCSDSEDNK 743
Query: 275 KVSTTTETRQRSVHRSKK 292
KV+ E + +SKK
Sbjct: 744 KVNEEEELWSKKKEKSKK 761
>U23528-6|AAK31385.1| 216|Caenorhabditis elegans Hypothetical
protein B0034.4 protein.
Length = 216
Score = 28.3 bits (60), Expect = 9.6
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 212 RRPANAAKPADVNSLICDDEEECFVTI--EYRIHHDRITFSLHEPTRGQTFKSALKREVP 269
++P+ AKPA V + +D++ VT + ++ D+ + + S +
Sbjct: 23 KKPSERAKPAAVKKAV-EDKQPVKVTAFEQASLNEDKAEAMSNIEPSPKISNSTVPTAPT 81
Query: 270 SEDENKVSTTTETRQRSVHRSKKIVRE 296
+ E KV TT+ +RSV + +V E
Sbjct: 82 PKKEKKVVATTKKTERSVAQGPPLVSE 108
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.132 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,970
Number of Sequences: 27539
Number of extensions: 373861
Number of successful extensions: 1006
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 13
length of query: 382
length of database: 12,573,161
effective HSP length: 83
effective length of query: 299
effective length of database: 10,287,424
effective search space: 3075939776
effective search space used: 3075939776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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