GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   1.1  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    25   1.4  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    23   3.3  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 270 SEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEG-----KDNYKVKERNE 324
           S D N+     + R   +H  K+ + EE              +      K+  K +ER++
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRERSK 64

Query: 325 SGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKNEITFKEDI 376
                +RE  ++K+ ++               N++   ++++   I + E I
Sbjct: 65  ERSRDKRERERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQI 116


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 5/112 (4%)

Query: 270 SEDENKVSTTTETRQRSVHRSKKIVREEXXXXXXXXXXXXXXEG-----KDNYKVKERNE 324
           S D N+     + R   +H  K+ + EE              +      K+  K +ER++
Sbjct: 5   SRDRNREYKEKDRRYEKLHNEKEKLLEERTSRKRYSRSREREQNSYKNEKEYRKYRERSK 64

Query: 325 SGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSRRIKNEITFKEDI 376
                +RE  ++K+ ++               N+    ++++   I + E I
Sbjct: 65  ERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNINYIEQI 116


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 179 GGFCDGAEQMKVSEMVRSCGPRI 201
           GGFC    Q+ V   +  CGP +
Sbjct: 11  GGFCHSIIQIPVIIQLPFCGPNV 33


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,452
Number of Sequences: 429
Number of extensions: 4851
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 382
length of database: 140,377
effective HSP length: 59
effective length of query: 323
effective length of database: 115,066
effective search space: 37166318
effective search space used: 37166318
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)