GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000588-TA|BGIBMGA000588-PA|undefined
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32470.1 68415.m03967 F-box family protein-related contains T...    33   0.42 
At4g00910.1 68417.m00124 expressed protein contains Pfam profile...    30   2.2  
At4g34360.1 68417.m04882 protease-related similar to PIR|I46078 ...    30   3.0  
At3g04660.1 68416.m00499 F-box family protein contains F-box dom...    29   3.9  
At3g58220.1 68416.m06491 meprin and TRAF homology domain-contain...    29   6.9  

>At2g32470.1 68415.m03967 F-box family protein-related contains
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           similar to F-box protein Fbx8 (GI:6164735) [Homo
           sapiens]
          Length = 288

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 145 RTDTLPKC-AFEIDSLTPDDRACINSFGEEHHLHYGGFC-DGAEQMKVSEMV 194
           RTDT  +   F + S   + R   N+ GE +H+ YGG C DGA    VS+ +
Sbjct: 76  RTDTDQEYFVFTLSSQQKEWRKIENTTGETYHMVYGGICIDGAIYYGVSQSI 127


>At4g00910.1 68417.m00124 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 497

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 251 LHEPTRGQTFKSALKREVPSEDENKVSTTTETRQRSVH 288
           L E  +    ++    EVPSE+ENKV +   T   S+H
Sbjct: 405 LQETLKNVPIETNKPEEVPSEEENKVDSEERTTSMSLH 442


>At4g34360.1 68417.m04882 protease-related similar to PIR|I46078
           endothelin converting enzyme, Bos primigenius taurus
          Length = 248

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 85  LHPNELLFPLIYKQSHVNSMFKFGENWYTWSTEKRTDGSKATNYYICYDEPKRCDDIGWE 144
           L P+ +   + + Q H      F +  +TWS E  T G     ++    + KRC+D   +
Sbjct: 159 LKPDGIFISITFGQPHFRRPL-FKDPKFTWSMEYNTFGDGFHYFFYILRKGKRCNDEKED 217

Query: 145 RTDTLPKCAFEIDSLTPDD 163
                P  +   D L  +D
Sbjct: 218 EKCNDPSISLYQDELEGED 236


>At3g04660.1 68416.m00499 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 390

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 244 HDRITFSLHEPTRGQTFKSALKREVPSEDENKVSTTTETRQR 285
           H R+ FS++ P     F  +  +E PS D   VS T  +  R
Sbjct: 71  HPRLLFSVYRPNMQMQFFHSCSQEDPSSDHRSVSYTLNSDLR 112


>At3g58220.1 68416.m06491 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 487

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 312 EGKDNYKVKERNESGYTSRREDTKTKKFRVRPKTXXXXXXXXXXRNDSGYTSR---RIKN 368
           E K +Y+  ER   G+    E    K +  RP+           + DS   SR     ++
Sbjct: 232 ESKKDYE--ERTRGGFEYESEPVSKKDYEERPRESFEYESEAESKKDSEEGSRERYEYES 289

Query: 369 EITFKEDISNDTSE 382
           E   K+D  ND  E
Sbjct: 290 EEESKKDSENDCGE 303


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,609,498
Number of Sequences: 28952
Number of extensions: 340209
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 6
length of query: 382
length of database: 12,070,560
effective HSP length: 82
effective length of query: 300
effective length of database: 9,696,496
effective search space: 2908948800
effective search space used: 2908948800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)