Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000586-TA|BGIBMGA000586-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (253 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    30   0.37 
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    28   1.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.6  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   6.1  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   8.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   8.0  

>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 147 LVGAHTYHYNRCSLGIGFLGDYREELDPHTRVTDLQIARTKILLED 192
           ++GA  Y      + I F GDY  E D H  V ++   R  +L+ +
Sbjct: 184 VLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITE 229


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 111 QMRILQSNVLNNLEDDIPYNFLIGNDGRVYE 141
           Q+  L + +L N +D +PYNF + ++    E
Sbjct: 57  QLEALLNQLLENSDDPVPYNFALHHEDETIE 87


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 164  FLGDYREELDPHTRVTDLQI 183
            F G+ RE LDP+ R+TD +I
Sbjct: 1313 FEGNIRENLDPNHRLTDKKI 1332


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 105 FQTCASQMRILQSNVLNNLEDDIPYNFLIGNDGRVYEG 142
           F   + +M +LQ N  N   D +P + L+GN+  + +G
Sbjct: 822 FMNGSRRMNVLQQNQANFGGDFLPIDNLLGNNSDLMKG 859


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 149 GAHTYHYNRCSLGIGFLGDYREEL 172
           G +TY    C    GF+G Y E L
Sbjct: 124 GINTYSLKNCFQRSGFIGSYEESL 147


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
          XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 6  KLPLPRYLWKVLKNTSRAERLSCSVA--LTALVICIGLTLYFALTTETV----ANDDDID 59
          K+ LP    + + N    E   C +A  L+ L I   +  YFA+    +    AN DDI+
Sbjct: 4  KVHLPLAYQQQVFNELIEEDGLCVIAPGLSLLQIAANVLSYFAVPGSLLLLVGANVDDIE 63

Query: 60 VAPHEWNITREMWLAQIVNDTESV 83
          +  HE     E  L  +  +T SV
Sbjct: 64 LIQHEMESHLEKKLITVNTETMSV 87


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,232,288
Number of Sequences: 5004
Number of extensions: 51410
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 2,362,478
effective HSP length: 71
effective length of query: 182
effective length of database: 2,007,194
effective search space: 365309308
effective search space used: 365309308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)