GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000586-TA|BGIBMGA000586-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (253 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan oxyge...    22   5.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   5.2  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   6.9  
AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    21   9.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.1  

>AY052395-1|AAL15469.1|   76|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 76

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 54 NDDDIDVAPHEWNITREMWLAQIVNDTESVR 84
          +D+ + +  H+     E+W  QI+ + +S+R
Sbjct: 49 HDEHLFIVTHQ---AYELWFKQIIYELDSIR 76


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 54 NDDDIDVAPHEWNITREMWLAQIVNDTESVR 84
          +D+ + +  H+     E+W  QI+ + +S+R
Sbjct: 49 HDEHLFIVTHQ---AYELWFKQIIYELDSIR 76


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 54 NDDDIDVAPHEWNITREMWLAQIVNDTESVR 84
          +D+ + +  H+     E+W  QI+ + +S+R
Sbjct: 49 HDEHLFIVTHQ---AYELWFKQIIYELDSIR 76


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 223 KALKSFEHFDHKGILAN 239
           KA +SFE   H+ ++AN
Sbjct: 86  KAPQSFEDIQHQRVMAN 102


>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
          oxygenase protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)

Query: 70 EMWLAQIVNDTESVR 84
          E+W  QI+ + +S+R
Sbjct: 2  ELWFKQIIYELDSIR 16


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 202 KYYINGACDF 211
           K+Y NG CD+
Sbjct: 576 KHYANGLCDY 585


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,953
Number of Sequences: 317
Number of extensions: 2672
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 253
length of database: 114,650
effective HSP length: 55
effective length of query: 198
effective length of database: 97,215
effective search space: 19248570
effective search space used: 19248570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)