GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000586-TA|BGIBMGA000586-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (253 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468...    29   4.8  
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741...    29   4.8  
12_01_0011 + 90859-91169,92075-92622,92701-92803,92899-92998,934...    28   6.4  
11_01_0011 + 95001-95311,96217-96764,96843-96945,97041-97140,975...    28   6.4  
04_04_1459 + 33758891-33758954,33759101-33759327,33759916-337599...    28   6.4  
12_01_0268 - 1941515-1941534,1941868-1942057,1942155-1942322,194...    28   8.4  
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26...    28   8.4  

>07_01_0627 +
           4685077-4685155,4685978-4686336,4686761-4686862,
           4687528-4687598,4687871-4687989,4688327-4688422,
           4688527-4688636,4688734-4688814,4689124-4689224,
           4689663-4689771,4689971-4690076,4690140-4690225,
           4690324-4690449,4690816-4690902
          Length = 543

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 129 YNFLIGNDGRVYEGRGWGLVGAHTYHYNRCSLGIGFLGDYREELDPHTRVTDLQIARTKI 188
           Y +     G +    G GL+ A   HY++ S  +  +   ++ LDP++ +   ++    +
Sbjct: 483 YEWTSKQRGSISAEHGLGLMKAEKIHYSKSSEAVQLMASIKKLLDPNSILNPYKVLPQSV 542

Query: 189 L 189
           L
Sbjct: 543 L 543


>05_07_0274 -
           28873531-28873644,28873727-28873981,28874111-28874179,
           28874277-28874415,28874511-28875076,28875225-28875326,
           28875425-28875491,28875576-28876072,28876148-28876212,
           28876470-28876567,28876652-28876694,28876870-28876963,
           28877325-28877360,28877454-28877542,28877667-28877788,
           28878193-28878404
          Length = 855

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/88 (18%), Positives = 37/88 (42%), Gaps = 2/88 (2%)

Query: 58  IDVAPHEWNITREMWLAQIVNDTESVR-EYNPIRLVIVQHTVSPECDTFQT-CASQMRIL 115
           +D+ P E     + W  Q+  DT+ ++ + N   ++ V      +CD   + C +   +L
Sbjct: 325 VDIKPPEEETHLDSWKTQMEEDTKKIQIQDNRNHIIEVLSANDLDCDDLSSICQADTMVL 384

Query: 116 QSNVLNNLEDDIPYNFLIGNDGRVYEGR 143
            + +   +   + Y+ +   D     G+
Sbjct: 385 SNYIEEIIVSAVSYHMIHNKDPEYKNGK 412


>12_01_0011 +
          90859-91169,92075-92622,92701-92803,92899-92998,
          93453-93529,93608-93686,94108-94226,94330-94423
          Length = 476

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 9  LPRYLWKVLKNTSRAERLSC 28
          +P YLW+ L++T R  R+ C
Sbjct: 16 MPCYLWRTLRSTRRVRRVHC 35


>11_01_0011 +
          95001-95311,96217-96764,96843-96945,97041-97140,
          97595-97671,97750-97828,98250-98368,98472-98565
          Length = 476

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 9  LPRYLWKVLKNTSRAERLSC 28
          +P YLW+ L++T R  R+ C
Sbjct: 16 MPCYLWRTLRSTRRVRRVHC 35


>04_04_1459 +
          33758891-33758954,33759101-33759327,33759916-33759966,
          33760265-33760313,33760738-33761018
          Length = 223

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 25 RLSCSVALTALVICIGLTLYFALTTE 50
          +L+CSV LT + + +G+    ALTTE
Sbjct: 4  KLTCSVVLTVISLSLGILYRGALTTE 29


>12_01_0268 -
           1941515-1941534,1941868-1942057,1942155-1942322,
           1943425-1943568,1944284-1944443,1944512-1944621,
           1944900-1945019,1945649-1945766,1946610-1946729,
           1947228-1947285,1947590-1947723,1949332-1949414,
           1949544-1949786,1949851-1949976,1950075-1951562
          Length = 1093

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 11  RYLWKVLKNTSRAERLSCSVALTALVICIGLTLYFALTTETVANDDDIDVAPHEWN 66
           R L+  L  + R +R   S  L  L     LT++     +TVAN++D D A  +W+
Sbjct: 505 RKLYIGLSMSKRRQREQLSNILNCLTHLEDLTIW---RMDTVANNEDYDAALEDWS 557


>11_01_0036 +
           268028-268168,268734-268839,268920-269031,269126-269241,
           269321-269399,269476-269614,269689-269747,269924-270218,
           270303-270362,270502-270933
          Length = 512

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 81  ESVREYNPIRLVIVQHTVSPECDTFQTCA-SQMRILQSNVLNNLE---DDIP 128
           E+++ +  +RL I  HT S  C  F   A S +    S++LN L+   D+IP
Sbjct: 246 ENIQWWYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLLNLLDGKNDEIP 297


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,573,765
Number of Sequences: 37544
Number of extensions: 309689
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 7
length of query: 253
length of database: 14,793,348
effective HSP length: 80
effective length of query: 173
effective length of database: 11,789,828
effective search space: 2039640244
effective search space used: 2039640244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)