GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000586-TA|BGIBMGA000586-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (253 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_44273| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_53412| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1459

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 121 NNLEDDIPYNFLIGNDGRVYEGRGWGLVGAHTYHYNRCSLGIGFLGDYREEL 172
           N+L+D +PYNF  G  GR +   G    G +   Y    +G  ++ D +E+L
Sbjct: 854 NSLQDFMPYNFTEG-PGRYHNEVGSMDNGPNPVTYGNHVIGRPYIEDQQEDL 904


>SB_44273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 56  DDIDVAPHEWNITREMWLA---QIVNDTESVREYNPIRLVIVQHTVSP 100
           D++D + HE N+   +W++   QI    ES  +    RL +   T+SP
Sbjct: 21  DELDTSFHEMNLDGFLWMSPQQQITTGYESTTDTPSRRLSLQDSTLSP 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,514
Number of Sequences: 59808
Number of extensions: 361435
Number of successful extensions: 758
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 758
Number of HSP's gapped (non-prelim): 2
length of query: 253
length of database: 16,821,457
effective HSP length: 80
effective length of query: 173
effective length of database: 12,036,817
effective search space: 2082369341
effective search space used: 2082369341
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)