GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000586-TA|BGIBMGA000586-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (253 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-15|CAB16522.1|  236|Caenorhabditis elegans Hypothetical p...    29   3.2  
U56961-4|AAK39297.1|  142|Caenorhabditis elegans Hypothetical pr...    29   3.2  
L25599-2|AAK84536.1|  419|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF016683-4|AAB66195.1|  410|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    28   7.4  
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    28   7.4  

>Z99281-15|CAB16522.1|  236|Caenorhabditis elegans Hypothetical
           protein Y57G11C.21 protein.
          Length = 236

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 106 QTCASQMRILQSNVLNNLEDDIPYNFLIGNDGRVY 140
           QTC    R    N+ N  + + P+ F++GN+ R Y
Sbjct: 26  QTCIQNSRWTVVNLKNAFQAEGPWEFVLGNNSRSY 60


>U56961-4|AAK39297.1|  142|Caenorhabditis elegans Hypothetical
           protein T19D7.5 protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 13  LWKVLKNTSRAERLSCSVALTALVICIGLTLYFALTTETVANDDDI 58
           +W+V +++  A  L C++A+  +VI I L   F   + +    DD+
Sbjct: 65  VWRVSRSSLLALSLFCTIAVAVIVIAIVLLCTFITLSSSTEIPDDV 110


>L25599-2|AAK84536.1|  419|Caenorhabditis elegans Hypothetical
           protein F54H12.2 protein.
          Length = 419

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 106 QTCASQMRILQSNVLNNLEDDIPYNFLIGNDGRVY 140
           QTC    R    N+ N  + + P+ F++GN+ R Y
Sbjct: 5   QTCIQNSRWTVVNLKNAFQAEGPWEFVLGNNSRSY 39


>AF016683-4|AAB66195.1|  410|Caenorhabditis elegans Hypothetical
           protein K09F6.5 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 106 QTCASQMRILQSNVLNNLEDDIPYNFLIGNDGRVY 140
           QTC    R    N+ N  + + P+ F++GN  R Y
Sbjct: 26  QTCIQNSRWTVVNLKNAFQAEGPWEFVLGNSSRSY 60


>Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical
           protein F23B2.3 protein.
          Length = 626

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 196 RGFLHPKYYINGACDFQSTASPGSNLYKALKSFEH 230
           R F+HPK  I      + T SP S  Y A+  F +
Sbjct: 304 RYFVHPKDTIPNLASDEYTVSPNSVAYSAISKFRY 338


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I homolog
            protein.
          Length = 1257

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 14   WKVLKNTSRAERLSCSVALTALVICIGLTLYFALTTETV-ANDDDID 59
            WKVL    + E  S  V  T L  C     YFA++ +TV    DD+D
Sbjct: 1133 WKVLGGKKKYETDSSFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLD 1179


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
            flightless) homologprotein 1 protein.
          Length = 1257

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 14   WKVLKNTSRAERLSCSVALTALVICIGLTLYFALTTETV-ANDDDID 59
            WKVL    + E  S  V  T L  C     YFA++ +TV    DD+D
Sbjct: 1133 WKVLGGKKKYETDSSFVKHTRLFRCTNEKGYFAISEKTVDFCQDDLD 1179


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,601,276
Number of Sequences: 27539
Number of extensions: 272480
Number of successful extensions: 529
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 7
length of query: 253
length of database: 12,573,161
effective HSP length: 80
effective length of query: 173
effective length of database: 10,370,041
effective search space: 1794017093
effective search space used: 1794017093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)