GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000586-TA|BGIBMGA000586-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (253 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03210.1 68416.m00317 expressed protein                             32   0.43 
At5g56070.1 68418.m06995 hypothetical protein                          29   2.3  
At4g37880.1 68417.m05357 expressed protein                             29   4.0  
At1g66680.1 68414.m07579 S locus-linked protein, putative simila...    27   9.3  

>At3g03210.1 68416.m00317 expressed protein 
          Length = 368

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 21 SRAERLSCSVAL-TALVICIGLTLYFALTTETVANDDDIDVAPHEWNITRE----MWLAQ 75
          SR + L  S AL  +L +C+ LT YF   ++ VA+   + V  H  +   E    +W  +
Sbjct: 28 SRNKMLFFSGALFISLAVCVHLTPYFPSVSDIVASVSSVVVYDHRISCINEVNQIVWDVK 87

Query: 76 IVNDTESVREYN 87
           V + ESVR  N
Sbjct: 88 PVPNPESVRRNN 99


>At5g56070.1 68418.m06995 hypothetical protein
          Length = 119

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 9/43 (20%), Positives = 24/43 (55%)

Query: 197 GFLHPKYYINGACDFQSTASPGSNLYKALKSFEHFDHKGILAN 239
           G+++  Y++ G+C  Q T+ P  +L     + + +D + ++ +
Sbjct: 70  GYINYSYWLKGSCQLQLTSPPADDLLSRKYTLQKYDEECMMGD 112


>At4g37880.1 68417.m05357 expressed protein
          Length = 388

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 94  VQHTVSPECDTFQTCASQMRILQSNVLNNLEDDIPYNFLIGNDGRVYEGRGWGLVGAHTY 153
           V  T   EC T Q+     RIL++    +LE  +  N+ + N  ++ E R    +  H+ 
Sbjct: 137 VAETGESECSTRQSFVEMYRILEAMKRRDLEPAL--NWAVSNSDKLKEARSDLEMKLHSL 194

Query: 154 HYNRCSLG 161
           H+   + G
Sbjct: 195 HFLEIARG 202


>At1g66680.1 68414.m07579 S locus-linked protein, putative similar
          to S locus-linked protein SLL2 [Brassica napus]
          GI:1518113
          Length = 358

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 48 TTETVANDDDIDVAPHEWNITRE 70
          TT+++A+DDD  +A   W+I  E
Sbjct: 29 TTDSLASDDDRSIAADSWSIKSE 51


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,271,541
Number of Sequences: 28952
Number of extensions: 260086
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 471
Number of HSP's gapped (non-prelim): 4
length of query: 253
length of database: 12,070,560
effective HSP length: 79
effective length of query: 174
effective length of database: 9,783,352
effective search space: 1702303248
effective search space used: 1702303248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)