Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000585-TA|BGIBMGA000585-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.36 
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    30   0.36 
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    29   1.1  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   3.3  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   5.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    26   7.7  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   7.7  
SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma...    26   7.7  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 87  NTRKIRCSIAVFVCWALIVTVGLSFYVFHYALSKNEARLDLDIHEPWYLRRGDWQAMRPY 146
           N   ++C +   +  +L++  G   Y+F + ++  + RL   +   W L   D+  ++  
Sbjct: 356 NDSSLKCRVNSLI--SLVIKFGFGKYMFSFPITIKDLRLSGKLRIRWGL-SSDYPFIQTA 412

Query: 147 TMDFLELPVSFVII 160
           +  FLE P+ +  I
Sbjct: 413 SFSFLETPIVYANI 426


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 15/54 (27%), Positives = 26/54 (48%)

Query: 44  SQLNVSKSSRVHIGPKFVSVTQKVRNTEEIKGQLLGLELVSSQNTRKIRCSIAV 97
           S L+V  S + H     V +  K     E+  Q + + ++SS +   +RCS A+
Sbjct: 56  SLLDVILSKKTHFDKNHVQLLIKCLYPNELISQTIAIRIISSLDPHGLRCSYAI 109


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 189 RFEDIGPNFLISGNGIVFEGRGANVLSTMLKGWNRRSITIMFLGDYRTDKTTPAQFEHLD 248
           +F+DIGP+ +++  G++  G    V  T+L+ W       + L  Y  + T   Q  +  
Sbjct: 341 KFDDIGPSVILASPGMLQNG----VSRTLLERWAPDPRNTLLLTGYSVEGTMAKQITNEP 396

Query: 249 ILLNQLVKQGVLR 261
           I +  L  Q + R
Sbjct: 397 IEIVSLSGQKIPR 409


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 225 SITIMFLGDYRTDKTTPAQFEHLDILLNQLVKQGVLRPDYTILGQCQVKPLTVSPGRNIL 284
           S+ ++F  D  T+ T P    H ++L+N L K  +   D  I+  C +  L +     + 
Sbjct: 632 SLRLLFSMDL-TEMTDPQLSRHFELLINNLKKFFLTNNDLQIIQGCTILFLRLDSIPALK 690

Query: 285 KELK 288
           ++LK
Sbjct: 691 EDLK 694


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 48   VSKSSRVHIGPKFVSVTQKVRNTEEIKGQLLGLEL 82
            VS    V++GPKF+ V QK    +E +  L G EL
Sbjct: 1169 VSNEKAVNLGPKFLQVIQKF--IDEKEQNLEGTEL 1201


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)

Query: 22  DFVLMDERMIASASRAAVSP 41
           DFV+  +RMI S+ R+++SP
Sbjct: 518 DFVMSMKRMIPSSERSSISP 537


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)

Query: 88  TRKIRCSIAVFVCWALIVTVGLSFYV----FHYALSKNEARLDL 127
           T + R S+ + + W +I+ +G+SF      +  A+ K+E  LD+
Sbjct: 175 TAQWRVSMGINLLWGIIMFIGISFLPESPRYLIAIGKDEEALDI 218


>SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 120

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 97  VFVCWALIVTVGLSFYVFHYALSK 120
           V++ WAL     L F+  HY LS+
Sbjct: 24  VYIVWALTPAPVLKFFEIHYYLSR 47


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,376,722
Number of Sequences: 5004
Number of extensions: 56127
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 9
length of query: 304
length of database: 2,362,478
effective HSP length: 72
effective length of query: 232
effective length of database: 2,002,190
effective search space: 464508080
effective search space used: 464508080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)