Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000585-TA|BGIBMGA000585-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
(304 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1 ... 31 1.3
At2g29930.3 68415.m03638 F-box family protein contains F-box dom... 31 1.3
At2g29930.2 68415.m03636 F-box family protein contains F-box dom... 31 1.3
At2g29930.1 68415.m03637 F-box family protein contains F-box dom... 31 1.3
At4g05290.1 68417.m00801 hypothetical protein similar to At3g243... 30 1.7
At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00... 30 1.7
At5g35646.1 68418.m04256 hypothetical protein 30 2.2
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 29 3.9
At2g14774.1 68415.m01671 hypothetical protein 29 3.9
At2g05564.1 68415.m00590 hypothetical protein 29 3.9
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi... 29 5.1
At5g35010.1 68418.m04132 hypothetical protein similar to At3g243... 28 6.8
At2g13975.1 68415.m01553 Expressed protein 28 6.8
At5g36840.1 68418.m04414 hypothetical protein similar to At3g243... 28 8.9
At3g42740.1 68416.m04463 hypothetical protein similar to At3g243... 28 8.9
At3g24380.1 68416.m03061 hypothetical protein similar to At5g368... 28 8.9
At1g34730.1 68414.m04317 hypothetical protein similar to At3g243... 28 8.9
>At3g01510.1 68416.m00077 5'-AMP-activated protein kinase beta-1
subunit-related contains similarity to Swiss-Prot:P80387
5'-AMP-activated protein kinase, beta-1 subunit (AMPK
beta-1 chain) (AMPKb) (40 kDa subunit) [Sus scrofa]
Length = 591
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 193 IGPNFLISGNGIVFEGRGANVLSTMLK-GWNRRSITIM 229
IG +F SGNG VF+GRG L + K G+NRR ++
Sbjct: 22 IGSSFR-SGNGRVFDGRGIAYLGSREKFGFNRRRRVVL 58
>At2g29930.3 68415.m03638 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 256 KQGVLRPDYTILGQCQVKPLTVSPGRNILKELKDFQHW 293
K+ D L CQVK L +S R KELK +H+
Sbjct: 372 KKKTTEDDECCLSTCQVKVLNISGYRGTCKELKQMRHF 409
>At2g29930.2 68415.m03636 F-box family protein contains F-box domain
Pfam:PF00646
Length = 339
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 256 KQGVLRPDYTILGQCQVKPLTVSPGRNILKELKDFQHW 293
K+ D L CQVK L +S R KELK +H+
Sbjct: 252 KKKTTEDDECCLSTCQVKVLNISGYRGTCKELKQMRHF 289
>At2g29930.1 68415.m03637 F-box family protein contains F-box domain
Pfam:PF00646
Length = 459
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 256 KQGVLRPDYTILGQCQVKPLTVSPGRNILKELKDFQHW 293
K+ D L CQVK L +S R KELK +H+
Sbjct: 372 KKKTTEDDECCLSTCQVKVLNISGYRGTCKELKQMRHF 409
>At4g05290.1 68417.m00801 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 213
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE +S +N +++C G+ +F HYAL EA
Sbjct: 84 VTHESDIQGAILHLERISPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEEA 143
Query: 124 R 124
R
Sbjct: 144 R 144
>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
F-box domain
Length = 461
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 113 VFHYALSKNEARLDLDIHEPWYLRRGDWQAMRPYTMDFLELPVSFVIIGHTVT 165
+ +A+SKN L LD+ EP ++ D + P ++LP SF I VT
Sbjct: 110 LIEFAVSKNVKHLFLDLSEPRWVTNNDAAQLEP---GLIKLPESFYKITSLVT 159
>At5g35646.1 68418.m04256 hypothetical protein
Length = 230
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N I +++C + F +F HYAL EA
Sbjct: 101 VTHESDIQGAILHLERIAPRNAAAILACAILYICAGNAHMGCVYFRLFGSNHYALESEEA 160
Query: 124 R 124
R
Sbjct: 161 R 161
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL EA
Sbjct: 984 VTHESDIQGAILHLERIAPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEEA 1043
Query: 124 R 124
R
Sbjct: 1044 R 1044
>At2g14774.1 68415.m01671 hypothetical protein
Length = 230
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL EA
Sbjct: 101 VTHESDIQGAILHLERIAPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEEA 160
Query: 124 R 124
R
Sbjct: 161 R 161
>At2g05564.1 68415.m00590 hypothetical protein
Length = 231
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL EA
Sbjct: 102 VTHESDIQGAILHLERIAPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEEA 161
Query: 124 R 124
R
Sbjct: 162 R 162
>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
Phosphotransferase enzyme family, PF00441: Acyl-CoA
dehydrogenase C-terminal domain, PF02770: Acyl-CoA
dehydrogenase middle domain
Length = 824
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 166 QYCNQKYDCIKKIINVQ--KSHLDARFEDIG-PNFLIS 200
Q C+ Y C+ I+NVQ K H+ FE G P ++S
Sbjct: 260 QMCDVAYSCMHYIVNVQLDKEHVSEGFETTGLPEGMLS 297
>At5g35010.1 68418.m04132 hypothetical protein similar to At3g24380,
At5g36840, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 230
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL EA
Sbjct: 101 VTHESDIQGAILHLERIAPRNAAATFTCAILYICAGNAHMGGVYLRLFGSNHYALESEEA 160
Query: 124 R 124
R
Sbjct: 161 R 161
>At2g13975.1 68415.m01553 Expressed protein
Length = 103
Score = 28.3 bits (60), Expect = 6.8
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 82 LVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF 114
+V+ TR+ C + V + W ++T+ + F +F
Sbjct: 59 MVNDMKTRRNWCGLKVCIVWMFVITIVIFFVLF 91
>At5g36840.1 68418.m04414 hypothetical protein similar to At3g24380,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 434
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL +A
Sbjct: 101 VTHESDIQGAILHLERIAPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEDA 160
Query: 124 R 124
R
Sbjct: 161 R 161
>At3g42740.1 68416.m04463 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 230
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 72 EIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEAR 124
+I+G +L LE ++ +N +++C G+ +F HYAL EAR
Sbjct: 106 DIQGAILHLERIAPRNAATTLACAILYICAGNAHMGGVYLRLFGSNHYALESEEAR 161
>At3g24380.1 68416.m03061 hypothetical protein similar to At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790
Length = 230
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL +A
Sbjct: 101 VTHESDIQGAILHLERIAPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEDA 160
Query: 124 R 124
R
Sbjct: 161 R 161
>At1g34730.1 68414.m04317 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At3g43390, At2g05560, At4g08880, At1g27790
Length = 163
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 67 VRNTEEIKGQLLGLELVSSQNTRKIRCSIAVFVCWALIVTVGLSFYVF---HYALSKNEA 123
V + +I+G +L LE ++ +N +++C G+ +F HYAL +A
Sbjct: 101 VTHESDIQGAILHLERIAPRNAAATLACAILYICAGNAHMGGVYLRLFGSNHYALESEDA 160
Query: 124 R 124
R
Sbjct: 161 R 161
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,313
Number of Sequences: 28952
Number of extensions: 287235
Number of successful extensions: 600
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 17
length of query: 304
length of database: 12,070,560
effective HSP length: 81
effective length of query: 223
effective length of database: 9,725,448
effective search space: 2168774904
effective search space used: 2168774904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)
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