GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000585-TA|BGIBMGA000585-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875...    31   0.87 
09_04_0417 + 17404433-17405392                                         30   2.7  
12_01_0642 + 5414964-5415410,5415535-5416677                           29   3.5  
02_01_0610 + 4564016-4564018,4564166-4564243,4564764-4564788,456...    29   4.6  

>02_02_0300 -
           8746526-8747224,8749033-8749089,8749414-8749650,
           8750061-8750172,8750258-8750538,8752032-8752244,
           8753105-8753636,8753871-8753899
          Length = 719

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 12/85 (14%)

Query: 143 MRPYTMDFLELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGN 202
           MR   +DFL L  +F ++GH+V  +            N+ +  LDA  + + P     G+
Sbjct: 467 MRMLVLDFLVLCQTFPLLGHSVPMF-----------ENMDEKLLDAMCDRLKPMLYTEGS 515

Query: 203 GIVFEGRGANVLSTMLKGWNRRSIT 227
            I+ EG   N +  +++G N  S+T
Sbjct: 516 CIIREGDPVNEMLFIMRG-NLESMT 539


>09_04_0417 + 17404433-17405392
          Length = 319

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 2   WSDSDGERELAMMYRPDCSSDFVLMDERMIA 32
           W +S GE  +  + +PDC     LMD R++A
Sbjct: 285 WLESKGEEHVFFLNKPDCEESVALMD-RVVA 314


>12_01_0642 + 5414964-5415410,5415535-5416677
          Length = 529

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 27  DERMIASASRAAVSPPISQLNVSKSSRVHIGPKFVSVTQKVRNTEEIK-GQLLG 79
           DER  A   RA V   +S     ++S V +G   V V  +VR+T + + G+ LG
Sbjct: 473 DEREYAQTGRACVLAGMSSHGQQRASSVQLGELRVRVFVRVRDTGDAEDGEALG 526


>02_01_0610 +
           4564016-4564018,4564166-4564243,4564764-4564788,
           4564870-4564902,4565034-4565155,4565230-4565360,
           4565509-4565732,4565824-4566065,4566268-4566357
          Length = 315

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 135 LRRGDWQAMRPYTMDFLELPVSFVIIGHTVTQY-CNQKYDCIKKIINVQKSHLD 187
           L +G +  ++P+T DFL++     I+  T+  Y C    D I    N +K ++D
Sbjct: 107 LPKGTYVKLQPHTTDFLDISNPKAILEKTLRNYSCLTTGDSIMVAYNNKKYYID 160


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,633,888
Number of Sequences: 37544
Number of extensions: 341354
Number of successful extensions: 666
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 665
Number of HSP's gapped (non-prelim): 4
length of query: 304
length of database: 14,793,348
effective HSP length: 82
effective length of query: 222
effective length of database: 11,714,740
effective search space: 2600672280
effective search space used: 2600672280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)