Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000585-TA|BGIBMGA000585-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
(304 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 31 1.2
SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26) 31 1.2
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_28387| Best HMM Match : RVT_1 (HMM E-Value=0.0013) 31 1.2
SB_6920| Best HMM Match : RVT_1 (HMM E-Value=2.7e-06) 31 1.2
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031) 31 1.2
SB_47528| Best HMM Match : RVT_1 (HMM E-Value=9.9e-16) 31 1.2
SB_42168| Best HMM Match : NolV (HMM E-Value=7.1) 31 1.2
SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11) 31 1.2
SB_16359| Best HMM Match : RVT_1 (HMM E-Value=0.00049) 31 1.2
SB_9018| Best HMM Match : NolV (HMM E-Value=2.7) 31 1.2
SB_9990| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 30 2.0
SB_59277| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_23375| Best HMM Match : PCI (HMM E-Value=9.5) 28 8.2
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76) 28 8.2
SB_25457| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-08) 28 8.2
SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_53343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 779
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 458 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 517
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 518 PPLLLSKLKAYGAQDTCLRLLESYLSDR 545
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 93 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 152
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 153 PPLLLSKLKAYGAQDTCLRLLESYLSDR 180
>SB_33430| Best HMM Match : RVT_1 (HMM E-Value=1.3e-26)
Length = 288
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 46 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 105
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 106 PPLLLSKLKAYGAQDTCLRLLESYLSDR 133
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 2028 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 2087
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 2088 PPLLLSKLKAYGAQDTCLRLLESYLSDR 2115
>SB_28387| Best HMM Match : RVT_1 (HMM E-Value=0.0013)
Length = 220
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 46 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 105
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 106 PPLLLSKLKAYGAQDTCLRLLESYLSDR 133
>SB_6920| Best HMM Match : RVT_1 (HMM E-Value=2.7e-06)
Length = 250
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 8 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 67
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 68 PPLLLSKLKAYGAQDTCLRLLESYLSDR 95
>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
Length = 546
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 354 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 413
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 414 PPLLLSKLKAYGAQDTCLRLLESYLSDR 441
>SB_47528| Best HMM Match : RVT_1 (HMM E-Value=9.9e-16)
Length = 228
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 46 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 105
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 106 PPLLLSKLKAYGAQDTCLRLLESYLSDR 133
>SB_42168| Best HMM Match : NolV (HMM E-Value=7.1)
Length = 414
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 291 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 350
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 351 PPLLLSKLKAYGAQDTCLRLLESYLSDR 378
>SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11)
Length = 887
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 777 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 836
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 837 PPLLLSKLKAYGAQDTCLRLLESYLSDR 864
>SB_16359| Best HMM Match : RVT_1 (HMM E-Value=0.00049)
Length = 220
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 46 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 105
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 106 PPLLLSKLKAYGAQDTCLRLLESYLSDR 133
>SB_9018| Best HMM Match : NolV (HMM E-Value=2.7)
Length = 426
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 291 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 350
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 351 LPLLLSKLKAYGAQDTCLRLLESYLSDR 378
>SB_9990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 46 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 105
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + LK + + + L Y +D+
Sbjct: 106 PPLLLSNLKAYGAQDTCLRLLESYLSDR 133
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/25 (48%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
Query: 244 FEHLDILLNQLVKQGVLRPDYTILG 268
++HLD+LL+ L+K G L+P + I+G
Sbjct: 42 YKHLDVLLHMLLKHG-LKPGFEIMG 65
>SB_59277| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 136 RRGDWQAMRPYTMDFLELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGP 195
R +W+ ++F + +S + GHT + C + ++ I +V +SH D+ P
Sbjct: 74 RPANWKNENIAILEFFPIVLSLYLWGHTTVRTCQRVMANVELIGSVLQSHAGKSAFDVHP 133
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/88 (20%), Positives = 38/88 (43%)
Query: 151 LELPVSFVIIGHTVTQYCNQKYDCIKKIINVQKSHLDARFEDIGPNFLISGNGIVFEGRG 210
++L SF + + + ++Y C +IN+ + AR E + N L + F+
Sbjct: 756 VQLATSFDSLMYVNSSAYRKQYSCETTLINLTERWKMARDERLSVNILSTDMSKAFDSMH 815
Query: 211 ANVLSTMLKGWNRRSITIMFLGDYRTDK 238
+L + K + + + L Y +D+
Sbjct: 816 PPLLLSKWKAYGAQDTCLRLLESYLSDR 843
>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 638
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 4 DSDGERELAMMYRPDCSSDFVLMDERM---IASAS--RAAVSPPISQLNVSKSSR 53
D GER+ A+ Y + +F++ +E++ IASA + P S VS+ SR
Sbjct: 368 DEPGERKEALKYYQKTNKEFIVFEEKILNWIASAEERETEIQPSDSVSRVSRRSR 422
>SB_23375| Best HMM Match : PCI (HMM E-Value=9.5)
Length = 208
Score = 28.3 bits (60), Expect = 8.2
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 212 NVLSTMLKGWNRRSITIMFLGDYRTDKTTPAQFEHLDILLNQLVKQGV--LRPDYTILGQ 269
N LS L+ RR++ I F G T A+ L N ++ V ++P+ ++
Sbjct: 107 NYLSDALEKVQRRALKIAFPGSSYEGSLTLAKLPTLHERRNIACQRFVSRIKPENSLFAI 166
Query: 270 CQVKPLTVSPGRNILKELKDFQ 291
+ + +T PG N+ + K +Q
Sbjct: 167 IKGRRITHDPGYNLRSKSKSYQ 188
>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
Length = 250
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 4 DSDGERELAMMYRPDCSSDFVLMDERM---IASAS--RAAVSPPISQLNVSKSSR 53
D GER+ A+ Y + +F++ +E++ IASA + P S VS+ SR
Sbjct: 74 DEPGERKEALKYYQKTNKEFIVFEEKILNWIASAEERETEIQPSDSVSRVSRRSR 128
>SB_25457| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-08)
Length = 369
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 4 DSDGERELAMMYRPDCSSDFVLMDERM---IASAS--RAAVSPPISQLNVSKSSR 53
D GER+ A+ Y + +F++ +E++ IASA + P S VS+ SR
Sbjct: 195 DEPGERKEALKYYQKTNKEFIVFEEKILNWIASAEERETEIQPSDSVSQVSRRSR 249
>SB_22757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1172
Score = 28.3 bits (60), Expect = 8.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 4 DSDGERELAMMYRPDCSSDFVLMDERM---IASAS--RAAVSPPISQLNVSKSSR 53
D GER+ A+ Y + +F++ +E++ IASA + P S VS+ SR
Sbjct: 83 DEPGERKEALKYYQKTNKEFIVFEEKILNWIASAEERETEIQPSDSVSQVSRRSR 137
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,964,099
Number of Sequences: 59808
Number of extensions: 394794
Number of successful extensions: 704
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 22
length of query: 304
length of database: 16,821,457
effective HSP length: 82
effective length of query: 222
effective length of database: 11,917,201
effective search space: 2645618622
effective search space used: 2645618622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
- SilkBase 1999-2023 -