Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (418 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   5.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   7.1  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   7.1  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   7.1  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   7.1  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   7.1  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 38  ASSTPISQLNVTKSSRVHIGPKFISVTQTVRNTEEIKGQILGQELISSKSTRKLRCSIA 96
           +S TP  +LN + +S V++  + I   +T    E++  ++  +    +  +R  RC +A
Sbjct: 48  SSPTPSDKLNTSTTSSVNVNDQNIRRYRTAFTREQL-ARLEKEFFKENYVSRPRRCELA 105


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis
          triggering hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 19 ISSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFISV--TQTVRNTEEIKGQ 76
          ISS  +          + A +STP+ + N++ S+ ++     I +  T +V N  E    
Sbjct: 2  ISSKFSPSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTIDLYNTSSVSNFNESSSS 61

Query: 77 I 77
          +
Sbjct: 62 V 62


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis
          triggering hormone receptorisoform A protein.
          Length = 434

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 19 ISSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFISV--TQTVRNTEEIKGQ 76
          ISS  +          + A +STP+ + N++ S+ ++     I +  T +V N  E    
Sbjct: 2  ISSKFSPSTTTTTTTTSSALNSTPLIEFNISTSNYLYTPSSTIDLYNTSSVSNFNESSSS 61

Query: 77 I 77
          +
Sbjct: 62 V 62


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 105 VTLGLGFYISHYALS 119
           VT+G+ FY  H+ LS
Sbjct: 251 VTIGIAFYGHHFILS 265


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 343 ATDLQINRTQMLLDDGVRRGFLHPDYYIVG 372
           AT+   +  Q +L DGV RG L  +  I G
Sbjct: 144 ATNTVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 343 ATDLQINRTQMLLDDGVRRGFLHPDYYIVG 372
           AT+   +  Q +L DGV RG L  +  I G
Sbjct: 144 ATNTVWSHCQCVLADGVERGILTANRMIPG 173


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,391
Number of Sequences: 317
Number of extensions: 4183
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 418
length of database: 114,650
effective HSP length: 58
effective length of query: 360
effective length of database: 96,264
effective search space: 34655040
effective search space used: 34655040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)