Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (418 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.7  
SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)                30   4.0  
SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)                   30   4.0  
SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)                      29   5.3  
SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.0  
SB_14205| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-06)                 29   9.3  
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)         29   9.3  
SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)                     29   9.3  
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    29   9.3  

>SB_35564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 232 DYTKDKTTPVQFEHLNIVLDQLVKQGVL-RPDYTLYGQCQVASLT 275
           DY + KT PVQ +H   V D L K+ +   P+Y+++ + +  S T
Sbjct: 88  DYHEMKTMPVQTQHFKEVFDILDKEHLCGEPEYSMHDRSEDESTT 132


>SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)
          Length = 210

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 46  LNVTKSSRVHIGPKFISVTQTVRNTEEIKGQILGQELISSKSTRKLRCSIAVFVCW 101
           LN+ K S+VHI    +S+T T R+  E   + L    ++++S RK + +    V W
Sbjct: 94  LNI-KPSKVHIREGLLSITWTDRHVSEFDLKRLISRKLTNQSARKYKFAHEDVVLW 148


>SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)
          Length = 448

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 46  LNVTKSSRVHIGPKFISVTQTVRNTEEIKGQILGQELISSKSTRKLRCSIAVFVCW 101
           LN+ K S+VHI    +S+T T R+  E   + L    ++++S RK + +    V W
Sbjct: 120 LNI-KPSKVHIREGLLSITWTDRHVSEFDLKRLISRKLTNQSARKYKFAHEDVVLW 174


>SB_40319| Best HMM Match : RecX (HMM E-Value=1.9)
          Length = 249

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 130 EPWYLRRSDWQAMSPYSVDFLDLPLSFVIVGHSATNYCT 168
           E W     D QA+  Y  D LD+ + +V+   S  N+CT
Sbjct: 87  EQWQADLCDMQALRSYITD-LDVAMVYVVTWTSCRNWCT 124


>SB_39498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 179 DVQKSHLHRGWQDIGPNFLV 198
           DV  S L + WQD+GP+FLV
Sbjct: 325 DVGPSLLVKRWQDVGPSFLV 344


>SB_14205| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-06)
          Length = 392

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 94  SIAVFVCWTLIVTLGLGFYISHYALSKLTRLDLDIHEPWYLRRSDWQAMSPYSVDFLDLP 153
           SI + +CW +++ L   F+I++             H  + L ++D   M   +V+F    
Sbjct: 134 SILIMLCWLVVLALPASFFINNRKFV--------FHPGYALCKTDEGYMDTGTVEFFYAV 185

Query: 154 LSFVIVGHSATN 165
           + F+I G S  N
Sbjct: 186 VPFIITGISYVN 197


>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
          Length = 748

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 267 GQCQVASLTISPGPNVIQLPLPRFIWKVLKNTSRVERSLCAAAVSALIICIALT 320
           G  +  S+ ++P P+++    P  +W VL   +      C++A +AL I +A++
Sbjct: 43  GTIEQESIVLTP-PSLLFFTPPSLLWGVLHIMADRRTGACSSAFAALFILLAIS 95


>SB_12895| Best HMM Match : C1_3 (HMM E-Value=0.03)
          Length = 1832

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 10   KHETKSPPPISSDVAVVDDRIMA-VATQAASSTPISQLNVTKSSRVHIGPKFISVTQTVR 68
            +H+     P SSD  V   +  +  +      TP+  LN+T S++   G K   VT    
Sbjct: 1098 EHDGLGNEPYSSDSQVAATKKSSNTSVNKIGLTPVKSLNLTHSTKADSGLKSPKVTSIHT 1157

Query: 69   NTEEIKGQILGQELISSKSTRKLRCSI 95
            + E+ K      +  S KS   ++ S+
Sbjct: 1158 SHEDSKVISTSSDHSSKKSYPGIKSSL 1184


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 376 IRETVSPGINLYNALKKLKHFDHSGRFKHKTCTQIYAMIESE 417
           IRE +S   N  +AL+K++HF  +G+   +T T +  MIE++
Sbjct: 87  IREVIS---NASDALEKVRHFFLTGKDVSETETSLEIMIETD 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,857,639
Number of Sequences: 59808
Number of extensions: 564958
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 18
length of query: 418
length of database: 16,821,457
effective HSP length: 84
effective length of query: 334
effective length of database: 11,797,585
effective search space: 3940393390
effective search space used: 3940393390
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)