Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.23
SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.1
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 27 6.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 6.5
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 27 6.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 6.5
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 27 6.5
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 26 8.6
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 31.5 bits (68), Expect = 0.23
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 1 MKSDGDENPKHETKSPPPISSDVAVVDDRIMAVATQAASSTPISQL-NVTKSSRVHIGPK 59
++ + +P + P IS++ + D ++ST I L NV K +R++ P
Sbjct: 238 LRCNRGHSPLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNVKKGNRLN-SPP 296
Query: 60 FISVTQTVRNTEEIKGQILGQELISSKSTRKLRCSIAVFV 99
FI++ Q+++NT + L S TR ++A+ +
Sbjct: 297 FITIPQSIKNTNS-NFLLSSPSLFSDTRTRPASYALALII 335
>SPBP8B7.13 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 28.3 bits (60), Expect = 2.1
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 9/111 (8%)
Query: 14 KSPPPISSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFISVTQTVRNTEEI 73
K SS V D R + T +T Q+N T S + K S +Q T
Sbjct: 146 KRSAKFSSMVGSSDTRCNSPTTARGLATSPLQINPTTSKSPLLNKKLSSTSQEPFRTSRR 205
Query: 74 KGQILGQELISSKSTRKL---RCSIAVFVCWTLIVTLGLGFYISHYALSKL 121
GQ G +++K R L R I+ F + V L L ++ HYA+ L
Sbjct: 206 SGQESGD--VTTKMLRNLLHKRLWISFF--FACFVVLSLVYF--HYAVQPL 250
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 6.5
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 207 GRGANVFGAMAIAWNRRSILIMFLGDYTKDKTTPVQFEHLNIVLDQLVKQGVLRPD 262
G GA+V A A+A N + + G+Y+ T +E+ VLD L+ +G R D
Sbjct: 341 GGGASVVYADAVAVNGAADELANYGEYSGAPTDGQTYEYAKTVLD-LMTRGEPRAD 395
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 9 PKHETKSPPPISSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGP 58
P + T S P SS + + +ASSTP+S +N T ++ P
Sbjct: 407 PSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATSASSTP 456
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 26.6 bits (56), Expect = 6.5
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 44 SQLNVTKSSRVHIGPKFISVTQTVRNTEEIKGQILGQELISSKSTRKLRCSIAV 97
S L+V S + H + + E+ Q + +ISS LRCS A+
Sbjct: 56 SLLDVILSKKTHFDKNHVQLLIKCLYPNELISQTIAIRIISSLDPHGLRCSYAI 109
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 6.5
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 7 ENPKHETKSPPPISSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFISVTQT 66
EN K TK+ +SS V+ A+A +AS+ P S + TKSS K S++ T
Sbjct: 338 ENEKSSTKNDSTVSSSAVVMAPAGPAMA-PSASNKP-SASSTTKSSNSKSKKKVTSISGT 395
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 225 ILIMFLGDYTKDKTTPVQFEHLNIVLDQLVKQ-GVLRPDYTLYGQCQVASL 274
I ++F+ D + TP + LNI + V ++ +++LY VA+L
Sbjct: 222 ITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMADNHSLYNTLPVATL 272
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 209 GANVFGAMAIAWNRRSILIMFLGDY 233
G + A+A W++RSI++ +LG Y
Sbjct: 49 GVSKAEAIASTWSKRSIIVAYLGLY 73
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.136 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,948
Number of Sequences: 5004
Number of extensions: 76796
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 20
length of query: 418
length of database: 2,362,478
effective HSP length: 75
effective length of query: 343
effective length of database: 1,987,178
effective search space: 681602054
effective search space used: 681602054
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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