GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1841 + 40267902-40268485,40269290-40270421                       31   1.7  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   9.2  
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    29   9.2  
03_01_0559 - 4161308-4161844                                           29   9.2  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           29   9.2  

>01_06_1841 + 40267902-40268485,40269290-40270421
          Length = 571

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 217 AIAWNRRSILIMFLGDYTKDKTTPVQFEHLNIVLDQLVKQGVLRPDYTLYGQCQVASLTI 276
           A+ W+ +  L+ F  + TK + +P   + L +VL +L+K  VL PD+ L  QC+    ++
Sbjct: 264 ALVWSYKLRLLAFADEITKLQLSP---DKLFVVL-RLLK--VLNPDFFLVSQCRPEEFSV 317

Query: 277 SPGPNVIQ 284
           +   + +Q
Sbjct: 318 AKYDDTLQ 325


>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 102 TLIVTLGLGFYISHYALSKLTRLDLDIHEPWYLRRSDWQ---AMSPYSVDFL 150
           T + TLGL + I  +   KLT  D  +     L RS+ Q    +SP+S+DFL
Sbjct: 734 TKLRTLGLDWRIGDFHKEKLTYADNFVSSLGKLGRSNLQYLTLISPWSLDFL 785


>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 362 GFLHPDYYIVGACDIRETVSPGINLYNALKKLK 394
           G++ P+Y + G C ++  +S G+ L   +  LK
Sbjct: 256 GYMSPEYALEGTCSVKSYISFGVLLLKIVSGLK 288


>03_01_0559 - 4161308-4161844
          Length = 178

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)

Query: 80  QELISSKSTRKLRCSIAVFVCWTLIVTL 107
           +EL SS+  RKLR ++ V +C ++++ L
Sbjct: 46  EELTSSEQIRKLRTTVTVLLCVSVVIGL 73


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 7   ENPKHETKSPPPISSDVAVVDD 28
           E+P HE +   P+ SDV V+D+
Sbjct: 393 EDPNHEPRQHEPLDSDVQVIDE 414


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,999
Number of Sequences: 37544
Number of extensions: 493607
Number of successful extensions: 1087
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 6
length of query: 418
length of database: 14,793,348
effective HSP length: 84
effective length of query: 334
effective length of database: 11,639,652
effective search space: 3887643768
effective search space used: 3887643768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)