GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (418 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5 ...    31   1.2  
AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1 li...    31   1.2  
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    31   2.0  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    30   2.7  
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    30   3.5  
Z67736-2|CAA91535.1|  226|Caenorhabditis elegans Hypothetical pr...    29   6.1  
AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical ...    29   8.1  

>AF005372-1|AAB81030.1|  225|Caenorhabditis elegans histone H1.5
          protein.
          Length = 225

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 21 SDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFIS-VTQTVRNTEEIKG 75
          SDVAV +   +   T+A+ +T      + K   V   P FI+ +T+ V N ++ KG
Sbjct: 2  SDVAVAETPAVKTPTKASKATKAKATKIPKVKVVAAHPPFINMITEAVSNLKDRKG 57


>AF003145-1|AAB57720.1|  225|Caenorhabditis elegans Histone h1
          like protein 5 protein.
          Length = 225

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 21 SDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFIS-VTQTVRNTEEIKG 75
          SDVAV +   +   T+A+ +T      + K   V   P FI+ +T+ V N ++ KG
Sbjct: 2  SDVAVAETPAVKTPTKASKATKAKATKIPKVKVVAAHPPFINMITEAVSNLKDRKG 57


>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
           protein C03D6.4 protein.
          Length = 1390

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 15/63 (23%), Positives = 29/63 (46%)

Query: 12  ETKSPPPISSDVAVVDDRIMAVATQAASSTPISQLNVTKSSRVHIGPKFISVTQTVRNTE 71
           +   PP + + V  V+     +A+  A S+P+ +LN T ++     PK     +    T+
Sbjct: 872 QADEPPIVKTVVVTVESPAKPIASAPAVSSPLIKLNTTTATTTMTTPKVTVPKEEANKTQ 931

Query: 72  EIK 74
           + K
Sbjct: 932 DQK 934


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 101 WTLIVTLGLGFYISHY-ALSKLTRLDLDI 128
           W+L+++ G  FYI H  ALS+LT L + I
Sbjct: 104 WSLLISFGYRFYILHNPALSRLTLLKISI 132


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 101 WTLIVTLGLGFYISHY-ALSKLTRLDLDI 128
           W+L+++ G  FYI H  ALS+LT L + I
Sbjct: 104 WSLLISFGYRFYILHNPALSRLTLLKITI 132


>Z67736-2|CAA91535.1|  226|Caenorhabditis elegans Hypothetical
           protein F57G12.2 protein.
          Length = 226

 Score = 29.1 bits (62), Expect = 6.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)

Query: 238 TTPVQFEHLNIVLDQLVKQGVLRPDYTLYGQCQVASLTISPGPNVIQLPLPRFI 291
           + P+ F+H   +   L  +  ++    L    +   LT+ PGP++I  PLP+ I
Sbjct: 68  SAPIVFDHFICMRIGLNSKNNVQRLMALLTAHEFVDLTVLPGPSMIPPPLPQMI 121


>AL021448-2|CAA16277.2|  339|Caenorhabditis elegans Hypothetical
           protein Y2H9A.2 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 101 WTLIVTLGLGFYISHYALSKLTRLDL 126
           W+L+++ G  +YI HY  S LTRL L
Sbjct: 104 WSLLLSFGYRYYILHY--SALTRLKL 127


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,208,749
Number of Sequences: 27539
Number of extensions: 417820
Number of successful extensions: 1054
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 12,573,161
effective HSP length: 83
effective length of query: 335
effective length of database: 10,287,424
effective search space: 3446287040
effective search space used: 3446287040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)