GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (418 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.39 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   2.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   2.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   6.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   6.4  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.6 bits (56), Expect = 0.39
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 121 LTRLDLDIHEPWYLRRSDWQAMSPYS---VDFLDLPLSFVIVGHSATNYCTEKYECIKEM 177
           +TR DL +   W     D +AM P     V  +D   S +++ H + ++    Y C+   
Sbjct: 634 VTRGDLPLSISWL---KDGRAMGPSERVHVTNMDQYNSILMIEHLSPDH-NGNYSCVARN 689

Query: 178 LDVQKSHLHRGWQDIGPNFLVSGNGIVFE 206
           L  + SH  R    + P ++V    +  E
Sbjct: 690 LAAEVSHTQRLVVHVPPRWIVEPTDVSVE 718


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 74  KGQILGQELISSKSTRKLRCSIAVFVCWTLIVTLG-LGFYISHYALSKLTRLDLDIHEP 131
           +G+   +ELI  + + KLR  +  + C +L+ ++       S++    +T+L  ++ +P
Sbjct: 421 QGKFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQP 479


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 74  KGQILGQELISSKSTRKLRCSIAVFVCWTLIVTLG-LGFYISHYALSKLTRLDLDIHEP 131
           +G+   +ELI  + + KLR  +  + C +L+ ++       S++    +T+L  ++ +P
Sbjct: 389 QGKFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQP 447


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 132 WYLRRSDWQAMSPYSVDFLDLPLSF 156
           WY   S W A+ P ++ FL   L++
Sbjct: 433 WYSLASSWPALVPLALGFLAGELTY 457


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 4   DGDENPKHETKSPPPISS--DVAVVDDRIMAVATQ 36
           D D  PK     PPP SS  D A + D+I  +AT+
Sbjct: 334 DSDTPPKPAPPPPPPSSSGPDSAKL-DKIFDIATK 367


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 95  IAVF-VCWTLIVTLGLGFYISHYALSKL 121
           IAVF +CWT    + L ++I   +  K+
Sbjct: 266 IAVFFICWTPYYVMSLWYWIDRNSAYKI 293


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 223 RSILIMFLGDYTKDKTTPVQFEHLNIVLDQLVKQGVLRPDYTLYGQCQVASLTIS 277
           +S++  +  DYTK  T     + +  ++ + + Q   +   T Y   +VA+ T S
Sbjct: 168 KSVVTAYKADYTKISTLDAILDIIRNMVPENLVQACFQQAQTTYVTKEVATGTAS 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,844
Number of Sequences: 429
Number of extensions: 4823
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 418
length of database: 140,377
effective HSP length: 59
effective length of query: 359
effective length of database: 115,066
effective search space: 41308694
effective search space used: 41308694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)