GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000584-TA|BGIBMGA000584-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (418 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit (...    31   1.1  
At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein ...    30   2.5  
At2g46150.1 68415.m05739 expressed protein  and genefinder             29   7.6  
At2g28110.1 68415.m03415 exostosin family protein contains 1 tra...    29   7.6  
At1g77270.1 68414.m08999 expressed protein                             29   7.6  

>At5g17420.1 68418.m02044 cellulose synthase, catalytic subunit
           (IRX3) identical to gi:5230423
          Length = 1026

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 301 VERSLCAAAVSALIICIALTLYFTLSAKATTDDDVGDYRELEATDLQINRTQMLL 355
           +   L A     L I   +   FT+++KAT DDD G+    + T L I  T +L+
Sbjct: 879 ISAHLFAVVQGLLKILAGIDTNFTVTSKATDDDDFGELYAFKWTTLLIPPTTVLI 933


>At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 706

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 52  SRVHIGPKFISVTQTVRNTEEIKGQILGQELISSKSTRKLRCSIAVFVCWTLIV 105
           S++   P  +S + TV     +KG +   + + S S R     +AVF C+  +V
Sbjct: 100 SQLQASPSVVSRSSTVAGNSSVKGSVEDAQRVESVSRRSCYNPLAVF-CYVFVV 152


>At2g46150.1 68415.m05739 expressed protein  and genefinder
          Length = 221

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 296 KNTSRVERSLCAAAVSALIICIALTLYFTL 325
           ++ +R++ S+C  A S ++  I LTL FT+
Sbjct: 31  RSRNRIKCSICVTATSLILTTIVLTLVFTV 60


>At2g28110.1 68415.m03415 exostosin family protein contains 1
           transmembrane domain; similar to
           pectin-glucuronyltransferase (GI:23821292) [Nicotiana
           plumbaginifolia]; similar to NpGUT1 homolog
           (GI:23821294) [Arabidopsis thaliana]; contains Pfam
           profile PF03016: Exostosin family
          Length = 448

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 300 RVERSLCAAAVSALIICIALTLYFTLSAKATTDDD 334
           R E++LC       I+C  LTLYF  S     D D
Sbjct: 8   RTEKNLCFKQYYKWILCFILTLYFFASFFVDHDQD 42


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 324 TLSAKATTDDDVGDYRELEATDLQINRTQMLLDDGVRRG 362
           ++S +  T+D   D++ +  T L+   TQ    D VRRG
Sbjct: 312 SVSKRLKTEDGRADHKSISRTVLRTKETQQKKGDDVRRG 350


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,778,775
Number of Sequences: 28952
Number of extensions: 402334
Number of successful extensions: 1057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 6
length of query: 418
length of database: 12,070,560
effective HSP length: 83
effective length of query: 335
effective length of database: 9,667,544
effective search space: 3238627240
effective search space used: 3238627240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)