Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    26   0.30 
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    26   0.30 
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    26   0.30 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   6.5  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 14  TTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLR 73
           TT+    L   N A+ S  + S  TS   +        TN +N Q +E +K+  F++YL 
Sbjct: 221 TTSSSSALESPNPASRSSCLGS-NTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLT 279

Query: 74  K 74
           +
Sbjct: 280 R 280


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
          protein.
          Length = 142

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 14 TTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLR 73
          TT+    L   N A+ S  + S  TS   +        TN +N Q +E +K+  F++YL 
Sbjct: 10 TTSSSSALESPNPASRSSCLGS-NTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLT 68

Query: 74 K 74
          +
Sbjct: 69 R 69


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
          protein.
          Length = 142

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 14 TTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLR 73
          TT+    L   N A+ S  + S  TS   +        TN +N Q +E +K+  F++YL 
Sbjct: 10 TTSSSSALESPNPASRSSCLGS-NTSSMLSLNCLNTGRTNFTNKQLTELEKEFHFNKYLT 68

Query: 74 K 74
          +
Sbjct: 69 R 69


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
          transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 47 PRDVETNASNAQKSEKDKDIPFSRYL 72
          PR + T  +N Q  E +K+  F++YL
Sbjct: 4  PRRLRTAYTNTQLLELEKEFHFNKYL 29


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 47  PRDVETNASNAQKSEKDKDIPFSRYL 72
           PR + T  +N Q  E +K+  F++YL
Sbjct: 135 PRRLRTAYTNTQLLELEKEFHFNKYL 160


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 35  SIQTSQFNATEGPRDVETNASNAQKSEKDKDIP 67
           SI+T  FN   G +    NA NA  + K  +IP
Sbjct: 362 SIETDDFNGLSGTKYQILNAINA--ALKSDEIP 392


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,142
Number of Sequences: 317
Number of extensions: 2693
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 114,650
effective HSP length: 57
effective length of query: 247
effective length of database: 96,581
effective search space: 23855507
effective search space used: 23855507
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)