GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    31   0.21 
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    29   1.1  
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    27   3.3  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    26   5.8  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.8  

>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 50  VETNASNAQKSEKDKDIPFSRYLRKVVKTSSRVIRALSI-AAFVILLTVVAFMLYFTIMA 108
           ++ NA       +D+ +PFSRY  K+ KT++  + A+ +   F I L ++       I A
Sbjct: 368 MQANARTIWAFSRDQALPFSRYWYKINKTTTTPVIAVWLNVVFCIALNLIGLGSIEAIEA 427

Query: 109 NFS 111
            FS
Sbjct: 428 IFS 430


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 187 YNFMIGNDGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNYDRHTQVSKLQIERMKLLLEK 246
           Y++M+ NDG+ +E               +  LGL  V N D   + S LQ + M+     
Sbjct: 293 YDWMLLNDGKGWESSS-SHFSVVAMKRRKNYLGLNVVQNDDSRKKNSTLQTQNMRFKSSY 351

Query: 247 GVR 249
           GVR
Sbjct: 352 GVR 354


>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)

Query: 7   HTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDI 66
           H E+       +++ N  +V   S + + IQ   FN       +    S+A+K EK + I
Sbjct: 213 HPEANQIIKRALLLSNGLSVQPKSVEESQIQ---FNELAQKFGIPLELSSAEKLEKLRAI 269

Query: 67  PFSRYLRKVVKTSSRVIRALSIAAFV 92
           PF      ++       RA++   FV
Sbjct: 270 PFQDLADNILNLRLHTFRAVTDGDFV 295


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 33  VASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSSRVIRAL--SIAA 90
           V  +Q +   A     D  ++AS++  S+K+ DIP S  L      +SR +RA   S   
Sbjct: 72  VTRLQPTSPMAVNAASDEASHASSSDSSDKNPDIPSSPLL-----MNSRALRASRGSSGP 126

Query: 91  FVILLTVVAFMLYFTIMANFSSEDGDRTAPHEWDISRVLWQARWANNTQRTTAFDPIR 148
            ++ +   AF       A+ +  DG++ +      +R++  +R   +  R   F+P R
Sbjct: 127 LIVPIDHSAFQAEDEGTADKTKVDGNKLSIQPRKANRIVDFSRIKASPDR-KKFEPRR 183


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/58 (17%), Positives = 29/58 (50%)

Query: 228 RHTQVSKLQIERMKLLLEKGVREGFLDPNYHIVAASDIQNTDSPGSNLYKALKELDHF 285
           RH +  K++++++   L +G+ E  ++ N        +   D    ++ + + +++HF
Sbjct: 777 RHLESDKMELDKLVHHLNRGIEEANIEENAVKKRLCLLMGCDYSSVSILQIVSQIEHF 834


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,563
Number of Sequences: 5004
Number of extensions: 53762
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 5
length of query: 304
length of database: 2,362,478
effective HSP length: 72
effective length of query: 232
effective length of database: 2,002,190
effective search space: 464508080
effective search space used: 464508080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)