GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0700 - 5413026-5413122,5413226-5413356,5413840-5413905,541...    31   0.87 
10_08_0918 - 21560635-21560795,21560847-21560935,21561696-215617...    31   1.5  
01_01_0098 + 744582-745380,746107-746130,746500-747569                 31   1.5  
01_02_0013 + 10162478-10163581                                         30   2.7  
03_02_0700 - 10517754-10519100                                         29   3.5  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    29   6.1  
04_04_0440 - 25219961-25221529                                         28   8.1  

>01_01_0700 -
           5413026-5413122,5413226-5413356,5413840-5413905,
           5413986-5414037,5414496-5414581,5414682-5414851,
           5414974-5415057,5415302-5415372,5415461-5415621
          Length = 305

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 3   RRGVHTESG-PSTTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQK 59
           RR V  E    +  A+V++ +D + +      D+ S+ T     TEG + + +  S  +K
Sbjct: 82  RRAVSLEEEYDAAGAEVVLGDDEDASKQEEEEDIPSMDTLDIGKTEGIKSIPSYFSAGKK 141

Query: 60  SEKDKDIP 67
           +E+++DIP
Sbjct: 142 AEEEEDIP 149


>10_08_0918 -
           21560635-21560795,21560847-21560935,21561696-21561760,
           21561841-21561892,21562271-21562356,21562457-21562626,
           21562748-21562831,21563284-21563354,21563461-21563621
          Length = 312

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 3   RRGVHTESG-PSTTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQK 59
           RR V  E    +  A+V++ +D + +      D+ S+ T     TEG   + +  S  +K
Sbjct: 82  RRAVSLEEEYDAAGAEVVLGDDEDASKPEEEEDIPSMDTLDIGKTEGINSIPSYFSAGKK 141

Query: 60  SEKDKDIP 67
           +E+++DIP
Sbjct: 142 AEEEEDIP 149


>01_01_0098 + 744582-745380,746107-746130,746500-747569
          Length = 630

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 81  RVIRALSIAAFVILLTVVAFMLYFTIMANFSSE 113
           +VI A S+AAFV +  VVA +LY ++   ++ E
Sbjct: 271 KVIAATSVAAFVAVSLVVATVLYLSLKQRYNEE 303


>01_02_0013 + 10162478-10163581
          Length = 367

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 165 ACVAALRNLQSYFLINLHYDIPYNFMIGNDGRV 197
           AC+AALR L S  +++LH + P++ +   DG +
Sbjct: 180 ACLAALRGLHSRGVVHLHLN-PFHILADADGNI 211


>03_02_0700 - 10517754-10519100
          Length = 448

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 186 PYNFMI-GNDGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNYDRHTQVSKLQIERMKLL 243
           PYN ++ G D  VY+ + W  +   +F+   C   L F+  +        ++IE  K+L
Sbjct: 236 PYNLIMHGWDEMVYDDKNWIGLNTGSFLLRNCQWSLDFLDTWAPMGPKGPVRIEAGKVL 294


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 181 LHYDIPYNFMIGNDGRVYEGR----GWGMVGAHTFMYNRCTLGLGFVGNY 226
           L Y  P  F IG+   V + +    G+     H   +NRCT   G VGNY
Sbjct: 229 LQYANPCRFNIGHFDSVQDEQKDHAGFQTAYRHCSDWNRCTNDTGIVGNY 278


>04_04_0440 - 25219961-25221529
          Length = 522

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 13  STTADVIMLNDRNVATVSG--DVASIQTSQFNATEGPRDVETNASNAQKS 60
           S + D+++  D   A  +G  +   +Q ++        D+ TNASNAQ S
Sbjct: 449 SISLDIVLERDAGGAIENGGQEAGQVQITELTDQMAAMDLPTNASNAQSS 498


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,381,787
Number of Sequences: 37544
Number of extensions: 322585
Number of successful extensions: 705
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 7
length of query: 304
length of database: 14,793,348
effective HSP length: 82
effective length of query: 222
effective length of database: 11,714,740
effective search space: 2600672280
effective search space used: 2600672280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)