GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)                       32   0.67 
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)                     29   6.2  
SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_20282| Best HMM Match : DUF1178 (HMM E-Value=6.1)                   29   6.2  

>SB_1012| Best HMM Match : ORC6 (HMM E-Value=2.9)
          Length = 1108

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 13  STTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIP 67
           STTADV  L  R+V++VS DV +++    ++  G  DV T       S    D+P
Sbjct: 910 STTADVPTLEGRSVSSVSSDVPTLEGRSDSSASG--DVPT-LEGRSDSSASSDVP 961



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 10   SGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKD 65
            S  S ++DV  L DR+V++ S DV +++    ++  G  DV +  S AQ   +D D
Sbjct: 952  SDSSASSDVPTLEDRSVSSASSDVPTLEGRSVSSASG--DVPSQ-SLAQDPSQDMD 1004


>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 169 ALRNLQSYFLINLHYDIPYNFMIGN--DGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNY 226
           AL   +S+FLI+L   IP+ FM+ +  DG   +G   G  G      +    G G  GNY
Sbjct: 84  ALNYFKSWFLIDLLSAIPFEFMVDHRKDGVSNQGNYEGYEGCLRCDDDSYGCGYGCDGNY 143


>SB_43727| Best HMM Match : TolA (HMM E-Value=0.21)
          Length = 340

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 47  PRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSSRVIRALSIAAFVILLTVVAFM 101
           PR+ E++ + A     D DI   RY+ KV       IRAL I   +IL  +  F+
Sbjct: 248 PREYESDGAFAVVCLLDLDILHQRYVSKVA-----YIRALVIVVIIILSNICCFL 297


>SB_32721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 5   GVHTESGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDK 64
           GV+T SGP+    V+   D  V TV  +   ++ S  +   G  +  T  S    S++  
Sbjct: 117 GVNTLSGPTNRDGVLRAEDNEVVTVIDN--GVEASSGSGESGAEE-STPGSAVDSSQEGT 173

Query: 65  DIPFSRYLRKVVKTSSRVIR 84
                + LR + +   R+++
Sbjct: 174 GFVDGKKLRMIKEAIKRILK 193


>SB_20282| Best HMM Match : DUF1178 (HMM E-Value=6.1)
          Length = 233

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 10  SGPSTTADVIMLNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKD 63
           + P T+A      +    +  GD+  + +SQ N  +G R+V TNAS+  KSE D
Sbjct: 115 AAPRTSAQTQTSLELTTVSAVGDLPRV-SSQVN-DKGERNVITNASSEIKSEPD 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,829,616
Number of Sequences: 59808
Number of extensions: 366577
Number of successful extensions: 986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 7
length of query: 304
length of database: 16,821,457
effective HSP length: 82
effective length of query: 222
effective length of database: 11,917,201
effective search space: 2645618622
effective search space used: 2645618622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)