Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
(304 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 30 2.4
U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily ass... 30 2.4
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass... 30 2.4
U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily ass... 30 2.4
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 30 2.4
Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical pr... 28 7.2
X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein ... 28 7.2
AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine r... 28 7.2
Z81132-5|CAB03436.1| 345|Caenorhabditis elegans Hypothetical pr... 28 9.5
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 8 TESGPSTTADVIMLNDRNVATVSGDVAS-IQTSQFNATE---GPRDVETNASNAQKSEKD 63
T TT V + +TVSGD S TS+F TE GP + S++++S+ D
Sbjct: 243 TTESDGTTTTVFTTTKDDTSTVSGDSNSGSSTSEFKNTETTTGPGSTVSEPSSSERSDLD 302
>U23168-4|AAU87833.1| 1379|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform d protein.
Length = 1379
Score = 29.9 bits (64), Expect = 2.4
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Query: 21 LNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSS 80
+ND + ++G + + G S K+E D D S L K+ S
Sbjct: 1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHS 60
Query: 81 RVIRALSIAAFVI--LLTVVAFMLYFTIMANFSSEDGDRTAPHEWDISRVLWQARWANNT 138
+ LS+ FV LL+ + L T++ S D D D + + N
Sbjct: 61 EPMNHLSVGGFVAKDLLSSLTIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNL 120
Query: 139 QRTTAF-DPIRLV 150
TT DP+ LV
Sbjct: 121 LLTTIIPDPLDLV 133
>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform b protein.
Length = 4034
Score = 29.9 bits (64), Expect = 2.4
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Query: 21 LNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSS 80
+ND + ++G + + G S K+E D D S L K+ S
Sbjct: 1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHS 60
Query: 81 RVIRALSIAAFVI--LLTVVAFMLYFTIMANFSSEDGDRTAPHEWDISRVLWQARWANNT 138
+ LS+ FV LL+ + L T++ S D D D + + N
Sbjct: 61 EPMNHLSVGGFVAKDLLSSLTIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNL 120
Query: 139 QRTTAF-DPIRLV 150
TT DP+ LV
Sbjct: 121 LLTTIIPDPLDLV 133
>U23168-2|AAC38806.2| 1633|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform a protein.
Length = 1633
Score = 29.9 bits (64), Expect = 2.4
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Query: 21 LNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSS 80
+ND + ++G + + G S K+E D D S L K+ S
Sbjct: 1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHS 60
Query: 81 RVIRALSIAAFVI--LLTVVAFMLYFTIMANFSSEDGDRTAPHEWDISRVLWQARWANNT 138
+ LS+ FV LL+ + L T++ S D D D + + N
Sbjct: 61 EPMNHLSVGGFVAKDLLSSLTIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNL 120
Query: 139 QRTTAF-DPIRLV 150
TT DP+ LV
Sbjct: 121 LLTTIIPDPLDLV 133
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily
assigned gene nameprotein 308, isoform c protein.
Length = 7548
Score = 29.9 bits (64), Expect = 2.4
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 3/133 (2%)
Query: 21 LNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIPFSRYLRKVVKTSS 80
+ND + ++G + + G S K+E D D S L K+ S
Sbjct: 1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHS 60
Query: 81 RVIRALSIAAFVI--LLTVVAFMLYFTIMANFSSEDGDRTAPHEWDISRVLWQARWANNT 138
+ LS+ FV LL+ + L T++ S D D D + + N
Sbjct: 61 EPMNHLSVGGFVAKDLLSSLTIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNL 120
Query: 139 QRTTAF-DPIRLV 150
TT DP+ LV
Sbjct: 121 LLTTIIPDPLDLV 133
>Z46676-1|CAA86661.1| 799|Caenorhabditis elegans Hypothetical
protein C08B11.1 protein.
Length = 799
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 156 VTPDCFTFVACVAALRNLQSYFLINLH 182
++ C T ++C+++LRNL+ + NL+
Sbjct: 190 ISSTCVTDISCISSLRNLEVLIMYNLN 216
>X16473-1|CAA34493.1| 799|Caenorhabditis elegans zyg-11 protein
protein.
Length = 799
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 156 VTPDCFTFVACVAALRNLQSYFLINLH 182
++ C T ++C+++LRNL+ + NL+
Sbjct: 190 ISSTCVTDISCISSLRNLEVLIMYNLN 216
>AF022980-10|AAG24193.1| 350|Caenorhabditis elegans Serpentine
receptor, class j protein44 protein.
Length = 350
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 144 FDPIRLVIIQHTVTPDCFTFVACV 167
F+ +R +I+Q TVTP CF+F C+
Sbjct: 244 FELLRALIVQ-TVTPICFSFSPCL 266
>Z81132-5|CAB03436.1| 345|Caenorhabditis elegans Hypothetical
protein T26E4.7 protein.
Length = 345
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 159 DCFTFVACVAALRNLQSYF-LINLHYDIPYNFMIGNDGRVYEGRGWGMVGAHTFM 212
D FTF AC+ +L + + F + + + Y F+ + G GW G T M
Sbjct: 187 DLFTFEACIKSLFGVGTRFGKVRIMKKVVYLFIFCFKNTQFRGTGWARDGWLTSM 241
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.135 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,290,447
Number of Sequences: 27539
Number of extensions: 288345
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 757
Number of HSP's gapped (non-prelim): 21
length of query: 304
length of database: 12,573,161
effective HSP length: 81
effective length of query: 223
effective length of database: 10,342,502
effective search space: 2306377946
effective search space used: 2306377946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)
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