GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   4.4  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   4.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 109 NFSSEDGDRTAPHEWDISRVLWQARW 134
           + S + G      EW+  R LW   W
Sbjct: 560 SISVDSGSINTVAEWEPPRALWPTEW 585


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 270 SPGSNLYKALKELDHFEHTDRFRNVDCEV 298
           +P  + ++ L+  ++ E  DR R V C++
Sbjct: 20  APVEDEFEPLEHFENEERADRHRRVTCDL 48


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 270 SPGSNLYKALKELDHFEHTDRFRNVDCEV 298
           +P  + ++ L+  ++ E  DR R V C++
Sbjct: 20  APVEDEFEPLEHFENEERADRHRRVTCDL 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,019
Number of Sequences: 429
Number of extensions: 3299
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 3
length of query: 304
length of database: 140,377
effective HSP length: 57
effective length of query: 247
effective length of database: 115,924
effective search space: 28633228
effective search space used: 28633228
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)