GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000583-TA|BGIBMGA000583-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (304 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32180.1 68414.m03958 cellulose synthase family protein simil...    29   2.9  
At5g57950.1 68418.m07251 26S proteasome regulatory subunit, puta...    29   5.1  
At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SD...    28   6.8  
At2g30820.1 68415.m03758 expressed protein                             28   6.8  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    28   8.9  
At1g13710.1 68414.m01611 cytochrome P450 family protein similar ...    28   8.9  

>At1g32180.1 68414.m03958 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit  gi:2827143 from
           [Arabidopsis thaliana], cellulose synthase-9
           (gi:9622890) from Zea mays
          Length = 979

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 7/97 (7%)

Query: 11  GPSTTADVIM---LNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKSEKDKDIP 67
           GP++ + V++    N  +V +VSGD+ S  + + N  +   DV  N    ++ E D  + 
Sbjct: 45  GPASLSIVLLEIDSNQESVPSVSGDIVSGSSGKDNEPD-LTDVRINV--GEEEEDDTLLS 101

Query: 68  FSRY-LRKVVKTSSRVIRALSIAAFVILLTVVAFMLY 103
              Y L +VVK S  +I    I   V ++++  F+ +
Sbjct: 102 KISYSLTRVVKISPIIIALYRILIVVRVVSLALFLFW 138


>At5g57950.1 68418.m07251 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           non-ATPase subunit 9 SP:O00233 from [Homo sapiens]
          Length = 227

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 27  ATVSGDVASIQTSQFNATEGPRDVETNAS 55
           A V+   AS+QTS F+ T GP DV+   S
Sbjct: 112 AAVNSLSASMQTSGFSVTSGPMDVDVVTS 140


>At4g11410.1 68417.m01839 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily
          Length = 317

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 10/85 (11%)

Query: 167 VAALRNLQSYFLINLHYDIPYNFMIGNDGRVYEGRGWGMVGAHTFMYNRCTLGLGFVGNY 226
           ++++ +++S+       D+P N +I N G          + A  F+ +   + L F  N+
Sbjct: 89  LSSMASVRSFASEYQSLDLPLNLLINNAG----------IMACPFLLSSDNIELQFATNH 138

Query: 227 DRHTQVSKLQIERMKLLLEKGVREG 251
             H  ++ L +ERMK    +  REG
Sbjct: 139 LGHFLLTNLLLERMKKTASESNREG 163


>At2g30820.1 68415.m03758 expressed protein 
          Length = 421

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 2   PRRGVHTESGPSTTADVIM-LNDRNVATVSGDVASIQTSQFNATEGPRDVETNASNAQKS 60
           P+ G H  S PS  ++V+  LN++          S+ TS+   +    D   NA  +  S
Sbjct: 95  PKGGEHLRSSPSCNSEVVFHLNEKKNEPCEEMGRSLDTSEQTPSSCLTDARNNARISSAS 154

Query: 61  EKDKD 65
             D +
Sbjct: 155 SDDSE 159


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 224 GNYDRHTQVSKLQIERMKLLLEKGVREG 251
           GN D++ Q S  ++ER  L LE  +R+G
Sbjct: 279 GNADKNRQASDQKLERGNLALENSLRKG 306


>At1g13710.1 68414.m01611 cytochrome P450 family protein similar to
           cytochrome P450 78A1 (SP:P48420) GI:349717 from [Zea
           mays]
          Length = 517

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 48  RDVETNASNAQKSEKDKDIPFSRYLRKVVKTSSRV 82
           R++ +  SN  +S  D DIP   YL+ +VK + R+
Sbjct: 346 REIASATSNNIRSLSDSDIPKLPYLQAIVKETLRL 380


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.135    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,875,134
Number of Sequences: 28952
Number of extensions: 269255
Number of successful extensions: 691
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 6
length of query: 304
length of database: 12,070,560
effective HSP length: 81
effective length of query: 223
effective length of database: 9,725,448
effective search space: 2168774904
effective search space used: 2168774904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)