Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000582-TA|BGIBMGA000582-PA|IPR010291|Protein of unknown
function DUF895, eukaryotic
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    31   0.31 
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    31   0.41 
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    29   2.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   5.1  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   6.7  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   8.9  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 11/97 (11%)

Query: 67   WRILKNVAAVSAAFMVQFTAFQGTANLQSSINAADGLGTVSLSSIYAALVVSCIFVPTFL 126
            + I   +  + AA   Q T F GT+N+Q          T  + S+  A  +   FV  F+
Sbjct: 1988 YSIFLALGQILAATAYQLTLFTGTSNIQ----------TYEIYSV-CAFFIGASFVWWFM 2036

Query: 127  IKRLTVKWTLCLSMICYAPYIGAQFYPAFYTLVPAGV 163
              RL   + L +  + YA  +     PAF T+ P  V
Sbjct: 2037 FARLPSYYVLSIPWLFYAVALFLVGLPAFDTVAPGRV 2073


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 16/114 (14%)

Query: 114 ALVVSCIFVPTFLIKRL-TVKWTLCLSMICYAPYIGAQFYPAFYTLVPAGVIVGLGAAPM 172
           A V++C+  P+FLI  + +V  T  L  +C   Y+ +        +V AG       A  
Sbjct: 97  AKVINCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSS------AMVQAGQSFSHIVASK 150

Query: 173 WTAKATYLTQAGSVYAKLTDQAVDGIIVRFFGFFFLAWQTAELWGNLISSLVFS 226
                 +L     +YA +   +       + GFF  A  T  L GN +S+L+FS
Sbjct: 151 --RNKDHLLVTDGIYAYVRHPS-------YVGFFIWALGTQMLLGNFVSTLLFS 195


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 10/134 (7%)

Query: 103 LGTVSLSSIYAALVVSCIFVPTFLIKRLTVKWTLCLSMICYAPYIGAQFYPAFYTLVPAG 162
           +  V+ S +YA   V C +    ++K L  +W L L    Y  YIG  +Y  F      G
Sbjct: 60  MADVTNSLLYALFTV-CGWAGGPILKYLGPRWALALGATGYPIYIGGLWY--FDNTGKQG 116

Query: 163 VIVGLGAAPMWTAKATYLTQAGSVYAKLTDQAVDGIIVRFFGFFFLAWQTAELWGNLISS 222
             +  GA   +   A  L  A + Y  L+    +    +   F    W        + S 
Sbjct: 117 FTIFTGA---YEGIAAGLLWASTAYISLSYSCAN----QKSQFIATQWTILAFGSTVGSF 169

Query: 223 LVFSSGEHSTNSTV 236
           + F    HST++ V
Sbjct: 170 IAFGINYHSTSTGV 183


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 135 TLCLSMICYAPYIGAQFYPAFYTLVPAGVIV 165
           TL LS I Y P    Q YP  + ++P G+++
Sbjct: 569 TLGLSQISYDPSCAEQKYPLLF-VIPGGIVI 598


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 146 YIGAQFYPA--FYTLVPAGVIVGLGAAPM 172
           Y+G   Y +   Y   P GV++GLG  PM
Sbjct: 840 YLGPPIYTSQRLYDTTPPGVVMGLGWTPM 868


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 10/53 (18%), Positives = 24/53 (45%)

Query: 301 EKQRKADPSKELSGIQLLSATAYQLKKPNQQLLIPITIWIGMEQAFIGADYTQ 353
           +K    D  KE++ +       +       ++L+ +T W G+++  +G   T+
Sbjct: 143 KKDESEDSGKEINNMVSAVGGTFDHLHVGHKVLLTLTAWFGVKEVIVGVSGTK 195


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,374
Number of Sequences: 5004
Number of extensions: 92972
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 225
Number of HSP's gapped (non-prelim): 7
length of query: 548
length of database: 2,362,478
effective HSP length: 76
effective length of query: 472
effective length of database: 1,982,174
effective search space: 935586128
effective search space used: 935586128
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 56 (26.6 bits)