Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000582-TA|BGIBMGA000582-PA|IPR010291|Protein of unknown
function DUF895, eukaryotic
         (548 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   3.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   4.9  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 308 PSKELSGIQLLSATAYQLKKPNQQLLIP 335
           P     G+Q L A  Y L K N Q ++P
Sbjct: 136 PVMPQGGVQALEAMLYTLDKLNTQDIVP 163


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 141 ICYAPYIGAQFYPAFYTLVPAGV---IVGLGAAPMWTAKATYLTQAGSVYAKL-TDQAVD 196
           +CY    GA   P F TLV AG+    + L    M T     + +   ++  +    AV 
Sbjct: 10  LCYKNGGGAFLIPYFLTLVLAGIPMFFMELALGQMLTVGGLGVFKIAPLFKGIGYAAAVM 69

Query: 197 GIIVRFFGFFFLAWQTAELWGNLISSLVFSSGEH--STNSTVVDTNKTALTC 246
              +  +    LAW     + ++ S L + S  +  +T + V   ++ +L+C
Sbjct: 70  SCWMNVYYIVILAWAIFYFFMSMRSELPWGSCNNYWNTKNCVNPYDRDSLSC 121


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.138    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,673
Number of Sequences: 429
Number of extensions: 5918
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 548
length of database: 140,377
effective HSP length: 61
effective length of query: 487
effective length of database: 114,208
effective search space: 55619296
effective search space used: 55619296
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 46 (22.6 bits)