Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000581-TA|BGIBMGA000581-PA|IPR001623|Heat shock protein
DnaJ, N-terminal
         (535 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   2.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 417 PEQTGDGVSPESPSPYSDVIDVTIPVQ 443
           P  T    +P SP P  D +D+ IPV+
Sbjct: 433 PILTPPSSNPVSPVPSPDPLDLAIPVR 459


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 403 LYGKLPADTSSHVIPEQTGDGVSPESPSPYSDVID 437
           L GKLP D    + P+      S  + SP S  +D
Sbjct: 431 LDGKLPHDDQPPLSPQSDSSSSSRSAESPMSVQVD 465


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,701
Number of Sequences: 429
Number of extensions: 5580
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 535
length of database: 140,377
effective HSP length: 61
effective length of query: 474
effective length of database: 114,208
effective search space: 54134592
effective search space used: 54134592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)