Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000580-TA|BGIBMGA000580-PA|undefined
         (247 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58745| Best HMM Match : rve (HMM E-Value=0.0023)                    30   1.6  

>SB_58745| Best HMM Match : rve (HMM E-Value=0.0023)
          Length = 943

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 2/23 (8%)

Query: 146 DVRTTTD--LHTSSICFSEGNDK 166
           D+RTT D  +HTS  CF+EG+D+
Sbjct: 351 DLRTTDDNAIHTSYSCFAEGDDR 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.131    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,511,892
Number of Sequences: 59808
Number of extensions: 142766
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 1
length of query: 247
length of database: 16,821,457
effective HSP length: 80
effective length of query: 167
effective length of database: 12,036,817
effective search space: 2010148439
effective search space used: 2010148439
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)