GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000580-TA|BGIBMGA000580-PA|undefined
         (247 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC025958-1|AAH25958.1|  270|Homo sapiens CCM2 protein protein.         31   3.8  
BC016832-1|AAH16832.1|  444|Homo sapiens cerebral cavernous malf...    31   3.8  
BC008859-1|AAH08859.1|  444|Homo sapiens cerebral cavernous malf...    31   3.8  
BC004903-1|AAH04903.1|  444|Homo sapiens cerebral cavernous malf...    31   3.8  

>BC025958-1|AAH25958.1|  270|Homo sapiens CCM2 protein protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 107 YPIISTRKLIDLSDXXXXXXXXXXXXQYNAHFVSNITKNDVRTTTDLHTSSICFSEGND 165
           + ++ T   ID  D              + H   + TK D++ T ++  S+ CF E  D
Sbjct: 43  FQVVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVDIKETYEVEASTFCFPESVD 101


>BC016832-1|AAH16832.1|  444|Homo sapiens cerebral cavernous
           malformation 2 protein.
          Length = 444

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 107 YPIISTRKLIDLSDXXXXXXXXXXXXQYNAHFVSNITKNDVRTTTDLHTSSICFSEGND 165
           + ++ T   ID  D              + H   + TK D++ T ++  S+ CF E  D
Sbjct: 217 FQVVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVDIKETYEVEASTFCFPESVD 275


>BC008859-1|AAH08859.1|  444|Homo sapiens cerebral cavernous
           malformation 2 protein.
          Length = 444

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 107 YPIISTRKLIDLSDXXXXXXXXXXXXQYNAHFVSNITKNDVRTTTDLHTSSICFSEGND 165
           + ++ T   ID  D              + H   + TK D++ T ++  S+ CF E  D
Sbjct: 217 FQVVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVDIKETYEVEASTFCFPESVD 275


>BC004903-1|AAH04903.1|  444|Homo sapiens cerebral cavernous
           malformation 2 protein.
          Length = 444

 Score = 31.1 bits (67), Expect = 3.8
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 107 YPIISTRKLIDLSDXXXXXXXXXXXXQYNAHFVSNITKNDVRTTTDLHTSSICFSEGND 165
           + ++ T   ID  D              + H   + TK D++ T ++  S+ CF E  D
Sbjct: 217 FQVVYTESTIDFLDRAIFDGASTPTHHLSLHSDDSSTKVDIKETYEVEASTFCFPESVD 275


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.131    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,960,218
Number of Sequences: 224733
Number of extensions: 530603
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 933
Number of HSP's gapped (non-prelim): 4
length of query: 247
length of database: 73,234,838
effective HSP length: 88
effective length of query: 159
effective length of database: 53,458,334
effective search space: 8499875106
effective search space used: 8499875106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)