GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000580-TA|BGIBMGA000580-PA|undefined
         (247 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    28   5.4  

>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 214 IPANKKRIIEVIVI-CTFVIISILYLIVK 241
           +PA+KK I+E IV+ C   +IS+  LIVK
Sbjct: 610 VPAHKKLIVEQIVVKCDEHVISLPALIVK 638


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 214 IPANKKRIIEVIVI-CTFVIISILYLIVK 241
           +PA+KK I+E IV+ C   +IS+  LIVK
Sbjct: 610 VPAHKKLIVEQIVVKCDEHVISLPALIVK 638


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.131    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,109,858
Number of Sequences: 27539
Number of extensions: 104636
Number of successful extensions: 219
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 2
length of query: 247
length of database: 12,573,161
effective HSP length: 80
effective length of query: 167
effective length of database: 10,370,041
effective search space: 1731796847
effective search space used: 1731796847
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)