Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000579-TA|BGIBMGA000579-PA|IPR001194|DENN,
IPR005112|dDENN
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 65 8e-11
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 62 1e-09
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 57 2e-08
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 32 0.89
01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394 32 0.89
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 29 4.8
06_03_1470 + 30371391-30372353 29 6.3
01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043... 29 6.3
08_02_0101 + 12374476-12376683 29 8.3
07_03_0018 - 12490940-12491195,12491575-12491775,12492174-124924... 29 8.3
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 65.3 bits (152), Expect = 8e-11
Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 9/131 (6%)
Query: 129 AVDTKCMAGLWAALLHERRVAIVASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVD 188
A+ + + L+AA L E+++ ++ S LSA V + + P WQ + +P+LP+ LVD
Sbjct: 735 ALSLESVLELFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVD 794
Query: 189 YMLAPMPFLIGVPRSVMENVRMSEIGDVVILDVDANELRSPFNDLETLP--PELISSLK- 245
++ AP+PF+ GV +++M + +V ++VD +++++ L LP EL+S L
Sbjct: 795 FLDAPVPFIAGVQHK-PPDIKM-KASSIVRINVDKDQVKA--CSLPQLPRFKELVSDLSP 850
Query: 246 --KALSDKNAL 254
LS +NAL
Sbjct: 851 IHARLSCENAL 861
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 27 EPYVLFKYPESYKNEEEIKSIPKFTFP 53
EP +LFKYP K E +P F FP
Sbjct: 300 EPQILFKYPPGKKAEIREIDLPSFCFP 326
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 61.7 bits (143), Expect = 1e-09
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 87 PMPGHTLKVIYNAGHSVFTCQCPDSNKLPSIPDNCNLTEYFSAVDTKCMAGLWAALLHER 146
P PG +V++ + + + + P LP + + +D + L+ A+L ER
Sbjct: 175 PTPGKN-RVLFAIENCLLSVEAPPKEWLPHA--DISFQPLVQCLDVDKLIQLFTAVLLER 231
Query: 147 RVAIVASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFLIGVPRSVME 206
R+ + ++K + L+ +A ++P+ WQH++IPI+ VDY+ AP P+++G+ V
Sbjct: 232 RILLRSNKYTLLTLVSEAICHLIYPLRWQHVYIPIIFSSGVDYIDAPTPYMMGLHSGV-- 289
Query: 207 NVRMSEIGDVVILDVDANELRSPFNDLET 235
D + +D N +P+ DL T
Sbjct: 290 --------DTSTVTMDGNACLNPYLDLFT 310
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 57.2 bits (132), Expect = 2e-08
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Query: 138 LWAALLHERRVAIVASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFL 197
L+AA L E+++ IV S LSA V + + P WQ + IP+LP ++D++ AP+P++
Sbjct: 612 LFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYI 671
Query: 198 IGVPRSVMENVRMSEIGDVVILDVDANELRSPFNDLETLPPELISSLK 245
+ +V S + + V++D + N+++S EL+S+L+
Sbjct: 672 -----NKTSDVH-SRLVNAVVIDANKNQIKSTSVPQLPQQKELLSALR 713
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 31.9 bits (69), Expect = 0.89
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 12 LFELFCEVSPGDHLKEPYVLFKYPESYKNEEEIKSIPKFTFPCSLEKLLNC 62
LF L+ E D L E + +F Y S ++EE++++ T C +++ NC
Sbjct: 104 LFALYYE----DCLPEHFTVFGYARSKMSDEELRNMISLTLTCRIDQRENC 150
>01_01_0239 + 1983267-1984008,1984148-1984180,1984280-1985394
Length = 629
Score = 31.9 bits (69), Expect = 0.89
Identities = 18/47 (38%), Positives = 20/47 (42%)
Query: 97 YNAGHSVFTCQCPDSNKLPSIPDNCNLTEYFSAVDTKCMAGLWAALL 143
Y+A S F C C D PSI D N + V AGL A L
Sbjct: 226 YDASTSAFACLCSDGGMRPSICDGKNRGKLALIVSLSAAAGLVFAFL 272
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 29.5 bits (63), Expect = 4.8
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 11 FLFELFCEVSPGDHLKEPYVLFKYPESYKNEEEIKSIPKFTFPCSLEKLLNCIANIINSP 70
FL + + PG L+ YV Y + N++EI +PK + C+L + +AN +
Sbjct: 234 FLVAVRPNMVPGLKLRSLYVAVGY--ALTNDDEI--LPKEGYHCNLTEKKEKLANRLVEM 289
Query: 71 ERDQLHSFLEACRIRPPMPGHTL 93
E+ + RP + GH L
Sbjct: 290 EQKPSSKNAPRSKWRPGVSGHVL 312
>06_03_1470 + 30371391-30372353
Length = 320
Score = 29.1 bits (62), Expect = 6.3
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 306 ILQSQIFQQFIDERLDLLNSGRGFN--DEFEVECNAYADKLNTGSGQKLKQQYRDWAKTV 363
I+ +F Q + R D + +GF D F NAY D TG K++ +
Sbjct: 79 IISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQT 138
Query: 364 KKEGGAFFKTVKD 376
E + T D
Sbjct: 139 SHETTGGWPTAPD 151
>01_05_0315 +
20803035-20803154,20803235-20804089,20804171-20804350,
20805191-20805286,20805895-20806179
Length = 511
Score = 29.1 bits (62), Expect = 6.3
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 222 DANELRSPFNDLETLPPELISSLKKALSDKNALG-DAVSRAFLRALVC---LIGGYRDAI 277
++ +RS + D ++LP +++S + L+ K A+ VS F RA + L+ G +
Sbjct: 24 NSKRIRSQWVDFQSLPEDILSRIMSKLTLKQAVQMSMVSSVFRRAWIFHPDLLFGTEELF 83
Query: 278 KIENGQLITFNPEAFVKT 295
+ QL + F+ T
Sbjct: 84 GTSDRQLRALSTNGFIDT 101
>08_02_0101 + 12374476-12376683
Length = 735
Score = 28.7 bits (61), Expect = 8.3
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 53 PCSLEKLLNCIANIINSPE--RDQLHSFLEACRIRPPMPGHTLKVIYNAGHSVFTCQCPD 110
P L +LL I+ +SP R H L PP+ ++ A H +F PD
Sbjct: 4 PTPLARLLAAISAAASSPADLRRLSHRVLSPSAPLPPLRCLNTLLMALARHRMF----PD 59
Query: 111 SNKLPSIPDNCNLTEYFSAVDTKCMAG 137
L S NL Y + ++ C+AG
Sbjct: 60 MESLASRMPARNLRTYTTLINAYCLAG 86
>07_03_0018 -
12490940-12491195,12491575-12491775,12492174-12492403,
12492624-12492744,12492823-12492972,12493106-12493314,
12494120-12494234,12494346-12494440,12494523-12494758,
12496182-12496338
Length = 589
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 12 LFELFCEVSPGDHLKEPYVLFKYPESYKNEEEIKSIPKFTFPCSLEKLLNC 62
LF L+ E D L + + +F Y S + E++++ T C ++K NC
Sbjct: 120 LFALYYE----DCLPKHFTIFGYARSKMTDAELRNMVSKTLTCRIDKRENC 166
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.138 0.416
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,706,204
Number of Sequences: 37544
Number of extensions: 500780
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1133
Number of HSP's gapped (non-prelim): 12
length of query: 386
length of database: 14,793,348
effective HSP length: 83
effective length of query: 303
effective length of database: 11,677,196
effective search space: 3538190388
effective search space used: 3538190388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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