GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000579-TA|BGIBMGA000579-PA|IPR001194|DENN,
IPR005112|dDENN
         (386 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19871| Best HMM Match : dDENN (HMM E-Value=0.15)                    65   1e-10
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        63   3e-10
SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)                  54   1e-07
SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)                 52   6e-07
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  51   1e-06
SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)                  33   0.39 
SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)                  30   3.7  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.4  
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)                   29   6.4  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.5  

>SB_19871| Best HMM Match : dDENN (HMM E-Value=0.15)
          Length = 309

 Score = 64.9 bits (151), Expect = 1e-10
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 1/75 (1%)

Query: 205 MENVRMSEIGDVVILDVDANELRSPFNDLETLPPELISSLKKALSDK-NALGDAVSRAFL 263
           M  VR   + +VVILD D N L  PF+D   LP ++   +K AL      + D VS+ FL
Sbjct: 1   MAQVRRMPLDEVVILDADTNLLECPFDDAAVLPQDVTHHMKSALKKTVIPIDDYVSKVFL 60

Query: 264 RALVCLIGGYRDAIK 278
            A+V L+GGYRDA++
Sbjct: 61  SAMVSLVGGYRDALR 75


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 60/226 (26%), Positives = 112/226 (49%), Gaps = 23/226 (10%)

Query: 39  KNEEEIKSIPKFT-FPCSLEKLLNCIANIINSPERDQLHSFLEACRIRP-PMPGHT---L 93
           KN+  I  +  ++ F CS +  L+ IA      + D++ ++++   + P P+ G T   +
Sbjct: 170 KNDNFIPGLHSWSVFTCSEDPKLSPIAT-----QMDEIETWIQRLLLAPAPVIGRTKVDM 224

Query: 94  KVIYNAGHSVFTCQCPDSNKLPSIPDNCNLTEYFSAVDTKCMAGLWAALLHERRVAIVAS 153
           +++    +   T   P++ + P I    ++      V+T C+  L   LL E++V I + 
Sbjct: 225 ELLCPESYPSLTFAYPENTRFPLIDFPVHIPMELLGVET-CLKVLTCILL-EQKVVIQSR 282

Query: 154 KPSRLSACVQAANATLFPMSWQHIFIPILPKHLVD---YMLAPMPFLIGVPRSVM--ENV 208
             + L+  V A    L+P+ +    IP+LP  + +    +LAP P++IGVP S    ++ 
Sbjct: 283 DYNALTMSVIALTRLLYPLEYMFPIIPLLPTCMANAEQLLLAPTPYVIGVPASFFRYKSK 342

Query: 209 RMSEIGDVVILDVDANELRSPF--NDLETLPPE----LISSLKKAL 248
                GD+ + D+D++++  P   ++L  LP E    LI  LK AL
Sbjct: 343 DFQIPGDLWVFDLDSSKMTVPMSADELPDLPEEEGQVLIRRLKMAL 388


>SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)
          Length = 595

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)

Query: 138 LWAALLHERRVAIVASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFL 197
           L+  +L E ++ I + +P+ L++  +A    LFP +WQ  +IP+ P  L D + AP PF+
Sbjct: 337 LFYLILTEHKILIHSLRPALLTSVAEALTNVLFPFTWQCPYIPLCPVALNDVLCAPCPFI 396

Query: 198 IGVPRSVMENVRMSEIGDVVILDVD 222
           IG+     +     +  DV  +D+D
Sbjct: 397 IGIDSRYFDQYDPPD--DVTSVDLD 419


>SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)
          Length = 423

 Score = 52.4 bits (120), Expect = 6e-07
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 169 LFPMSWQHIFIPILPKHLVDYMLAPMPFLIGV---PRSVMENVRMSEIGDVVILDVDANE 225
           +FP  WQH+++PILP  L  ++ AP+PF++G+         N+++     + ++D+D  +
Sbjct: 16  IFPFIWQHVYVPILPAALQHFLDAPVPFIMGLYCASEDFKANLQLPSEASLCLVDIDNCK 75

Query: 226 LRSPFNDLETLP--PELISSLKKALSDKN 252
           + SP  DL   P   +LI  L + +   N
Sbjct: 76  VLSP-EDLPEFPNKQDLIEELLETIEKFN 103


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 19/65 (29%), Positives = 41/65 (63%)

Query: 144 HERRVAIVASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFLIGVPRS 203
           H+ ++  ++S   +L+   +A  A ++P+ + +++IPILP  L+D++ AP P ++GV   
Sbjct: 248 HKNKILFISSSFVQLTTVTRAMLALMYPLKFSYVYIPILPAALLDFLRAPTPTIMGVHEI 307

Query: 204 VMENV 208
             +N+
Sbjct: 308 YKDNI 312


>SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)
          Length = 300

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 87  PMPGHTLKVIYNAGHSVFTCQCPDSNKLPSIPDNCNLTEYFSAVDTKCMAGLWAALLHER 146
           P PG T++  +N      TCQ P  N+LP    + +L E FS +  + +  L+  +L E 
Sbjct: 237 PPPGRTMR--FNCVKESITCQRPGPNELPLF--DYSLKEMFSWLGVENVVELFTCVLLEH 292

Query: 147 RVAIVAS 153
           ++ ++++
Sbjct: 293 QILLLSN 299


>SB_7173| Best HMM Match : dDENN (HMM E-Value=1.5e-08)
          Length = 416

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 287 FNPEAFVKTRKNM-QPFLRKILQSQIFQQFIDERL 320
           F+ +AF++++ +  QPF R++ ++  F  F+D RL
Sbjct: 140 FDLDAFIESKPSEDQPFYRELCKTHAFSSFLDSRL 174


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 152  ASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFLIGVPRSVMENVRMS 211
            +++P+RL A   A+ A+LF   +  +F P    H + Y  + +  L+G P      +R  
Sbjct: 1440 STQPARL-ASTPASIASLFNGYFSSVFGPSALAHPLPYQGSELLELVGAPHLSSVQLRTQ 1498

Query: 212  EIGDVVI-LDVD 222
            E+ + ++ LDV+
Sbjct: 1499 EVQNALLALDVN 1510


>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
          Length = 660

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 152 ASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFLIGVPRSVMENVRMS 211
           +++P+RL A   A+ A+LF   +  +F P    H + Y  + +  L+G P      +R  
Sbjct: 351 STQPARL-ASTPASIASLFNGYFSSVFGPSALAHPLPYQGSELLELVGAPHLSSVQLRTQ 409

Query: 212 EIGDVVI-LDVD 222
           E+ + ++ LDV+
Sbjct: 410 EVQNALLALDVN 421


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 13/89 (14%)

Query: 288  NPEAFVKTRKNMQPFLRKILQSQIFQQFIDERLD--------LLNSGRGFNDEFEVECNA 339
            N E   KT   +Q  ++K+    + Q+  +ERL         LL+S +   DE   +CN+
Sbjct: 1965 NRERTRKTIGELQAKVKKLSDELVKQKSREERLKVNLRKAKALLSSAKEARDETVQKCNS 2024

Query: 340  YADKLNTGSGQKLKQQYRDWAKTVKKEGG 368
            Y+ KL+      + ++Y D  + V++  G
Sbjct: 2025 YSSKLS-----HVSKKYNDKIQQVERLAG 2048


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,358
Number of Sequences: 59808
Number of extensions: 559950
Number of successful extensions: 1144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 15
length of query: 386
length of database: 16,821,457
effective HSP length: 83
effective length of query: 303
effective length of database: 11,857,393
effective search space: 3592790079
effective search space used: 3592790079
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)