GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000579-TA|BGIBMGA000579-PA|IPR001194|DENN,
IPR005112|dDENN
         (386 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   1.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   2.5  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   3.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   3.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   3.3  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)

Query: 338 NAYADKLNTGSGQKLKQQYRDWA 360
           N  +DK  TG+G +L Q Y DW+
Sbjct: 96  NVVSDK--TGNGGRLLQPYPDWS 116


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.8 bits (49), Expect = 2.5
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 297 KNMQPFLRKILQSQIFQQFIDERLDLLNSGRGFNDEFEVECNA-YADKLNTGSGQK 351
           KNM P L+ ++++  F+  + E +D +       +   V C A + D L  G   K
Sbjct: 173 KNMAPILKDLMETSYFKVVVVEDVDSVECCGALKN--IVACGAGFIDGLGLGDNTK 226



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 290 EAFVKTRKNMQPFLRKILQSQIFQ-QFIDERLDLLNSGRGFNDEF 333
           EAFVKT K +    +++L  Q  Q  F  E ++ +   +   + F
Sbjct: 276 EAFVKTGKKISELEKEMLNGQKLQGPFTAEEVNYMLKAKNMENRF 320


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 99  AGHSVFTCQCPDS------NKLPSIPDNCNLTEYFSAVDTKC 134
           A H+  +C C D       N   +I        YF+ +DTKC
Sbjct: 82  ASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNLIDTKC 123


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 99  AGHSVFTCQCPDS------NKLPSIPDNCNLTEYFSAVDTKC 134
           A H+  +C C D       N   +I        YF+ +DTKC
Sbjct: 87  ASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNLIDTKC 128


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 151 VASKPSRLSACVQAANATLFPMSWQHIFIPILPKHLVDYMLAPMPFL-IGVPRSVMENVR 209
           V+S  S+ S+ V     T+  +  ++I + +L   L++Y    +P    G P  V  N+ 
Sbjct: 11  VSSAASKTSSKVMLTRGTVNDIVSRNITM-VLENLLMNYENNQLPTHGKGTPTVVKTNIL 69

Query: 210 MSEIGDVVILDVD 222
           +  +G V  LD+D
Sbjct: 70  IRSMGPVSELDMD 82


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)

Query: 99  AGHSVFTCQCPDS------NKLPSIPDNCNLTEYFSAVDTKC 134
           A H+  +C C D       N   +I        YF+ +DTKC
Sbjct: 87  ASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNLIDTKC 128


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,362
Number of Sequences: 429
Number of extensions: 5150
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 7
length of query: 386
length of database: 140,377
effective HSP length: 59
effective length of query: 327
effective length of database: 115,066
effective search space: 37626582
effective search space used: 37626582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)