Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000578-TA|BGIBMGA000578-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (618 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    27   0.38 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.5  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 192 TPRCRIGQNYVDVNEPCSLNCTNE-NLSSVIGREKANMTCVDRHLNYRLC 240
           TP   I  ++ DV +P  +N T       V   +K   TC++  +NY +C
Sbjct: 2   TPHALISSDFHDVIKPL-INLTKIFGFLPVCSSQKGQKTCLNLSINYCIC 50


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 193 PRCRIGQNYVDVNEPCSLN-----CTNENLSSVIGREKANMTCV 231
           PR  +G N  D+N P S+N     C   + S   G+E  ++  V
Sbjct: 746 PRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDTNGKETRSIISV 789


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 193 PRCRIGQNYVDVNEPCSLN-----CTNENLSSVIGREKANMTCV 231
           PR  +G N  D+N P S+N     C   + S   G+E  ++  V
Sbjct: 638 PRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDTNGKETRSIISV 681


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,116
Number of Sequences: 317
Number of extensions: 7029
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 3
length of query: 618
length of database: 114,650
effective HSP length: 61
effective length of query: 557
effective length of database: 95,313
effective search space: 53089341
effective search space used: 53089341
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)