GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000578-TA|BGIBMGA000578-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    40   0.001
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    40   0.001
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    40   0.001
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    36   0.017
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    34   0.067
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    29   2.5  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    28   3.3  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    28   3.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    28   4.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   4.4  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   5.8  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   7.7  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   7.7  

>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 43/184 (23%), Positives = 77/184 (41%), Gaps = 18/184 (9%)

Query: 389 FLKTDSTKMSLNILGDVGTLLTSLPTFVFMMWTVAVGLCTGLLWNFLFWLLEDVSRLSCD 448
           +L     +  L +L  VG  L S   F+  + T         ++ +L+W    + +    
Sbjct: 37  YLGLTKREFKLMMLAGVGFFLDSYDLFIINLVTP--------IFEYLYW--GGIEKGPTG 86

Query: 449 SVMYIKTLQGLVSA---IQTFFGEIPFLFVSGYILKKVGHVKMMSLVLFA----FGVRFI 501
              Y   ++GLV+A   I   FG++ F F+  +  +K  + K M +V+ A      +   
Sbjct: 87  KGHYPSGIRGLVNASANIGNIFGQLLFGFMGDFFGRKFVYGKEMVIVIIATVLVIAMPKS 146

Query: 502 LYSFLTNAWWILPIEMLQGITFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASL 561
           ++S L+   W+     L G+  G  YP   +  S  S      T+  L+ A F+G G   
Sbjct: 147 IHSPLSKMMWVFCWRWLLGVGIGGDYPMSAAITSERSKIKRRGTLISLIFA-FQGFGTLA 205

Query: 562 GSFI 565
           G+ +
Sbjct: 206 GAIV 209


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 484 GHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYPTMTSYASIVSPPGTE 543
           G  K +      FG+   L     + W ++    + GI  G    T++   S + P    
Sbjct: 152 GRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAIAGIGGGGMNSTVSILMSDIVPLKQR 211

Query: 544 TTIQGLVGAVFEGVGASLGSFIGGQLYHHYQGWITFRI 581
            T QG++  VF  +G+SLG  +GG     Y   I F I
Sbjct: 212 GTYQGIIN-VFFAIGSSLGGPVGGYFADQYTWRIGFLI 248


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 43/184 (23%), Positives = 78/184 (42%), Gaps = 18/184 (9%)

Query: 389 FLKTDSTKMSLNILGDVGTLLTSLPTFVFMMWTVAVGLCTGLLWNFLFWLLEDVSRLSCD 448
           +L   + +  L +L  VG  L S   F+  + T         ++ +L+W    + +    
Sbjct: 37  WLGLTAKEFRLMMLAGVGFFLDSYDLFIINLVTP--------IFEYLYW--GGIEKGPNG 86

Query: 449 SVMYIKTLQGLVSA---IQTFFGEIPFLFVSGYILKKVGHVKMMSLVLFA----FGVRFI 501
              Y   ++GLV+A   I   FG++ F F+  +  +K  + K M +V+ A      +   
Sbjct: 87  KGHYPSGIRGLVNAASNIGNIFGQLMFGFMGDFFGRKFVYGKEMIIVIIATILLIAMPKS 146

Query: 502 LYSFLTNAWWILPIEMLQGITFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASL 561
           ++S L+   W+     L G+  G  YP   +  S  S      T+  L+ A F+G G   
Sbjct: 147 IHSPLSKMMWVFCWRWLLGVGIGGDYPMSAAITSERSKLNRRGTLISLIFA-FQGFGTLA 205

Query: 562 GSFI 565
           G+ +
Sbjct: 206 GAIV 209


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 7/137 (5%)

Query: 470 IPFLFVSGYIL-KKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYP 528
           +PF  +   ++ +K+  V   S+VLF FG    +     N  W++    +QGI  G    
Sbjct: 142 LPFCGIMSEVVGRKI--VLYTSIVLFLFGSA--MCGAAQNMLWLVLCRAVQGIGGGGIMS 197

Query: 529 TMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQ-GWITFRIYGIGSL 587
            +T   + ++P  T     G +G  + GV + +G  IGG +  +    WI F     G L
Sbjct: 198 LVTIVIADITPLQTRPYYTGCMGVTW-GVASVMGPLIGGAISQNTTWRWIFFINLPTGGL 256

Query: 588 VCCALHLTVQYVFKDKI 604
               L   +  V K  +
Sbjct: 257 SLALLIFFLNLVPKPTV 273


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 33.9 bits (74), Expect = 0.067
 Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 470 IPFLFVSGYIL-KKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYP 528
           +PF  +   ++ +K+  V   S+VLF FG    +     N  W++    +QGI  G    
Sbjct: 142 LPFCGIMSEVVGRKI--VLYTSIVLFLFGSA--MCGAAQNMLWLVLCRAVQGIGGGGITS 197

Query: 529 TMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQ-GWITFRIYGIGSL 587
            +T   + ++P  T     G +G  + G+ + +G  IGG +       WI F     G L
Sbjct: 198 LVTIVIADITPLQTRPYYTGCMGVTW-GLASVMGPLIGGAISQKASWRWIFFINLPTGGL 256

Query: 588 VCCALHLTVQYVFKDKI 604
               L   +  V K  +
Sbjct: 257 SLALLIFFLNLVPKPTV 273


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 476 SGYILKKVGHVKMM--SLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFG--MFYPTMT 531
           +GY+LK++   K+M  S++ F  G   I  + +   +W      +    +G  M +P  T
Sbjct: 361 TGYLLKRLKPTKIMVVSMIAFTVGTILIATAPIHQTYWAQTFVSIIVTPWGMDMSFPAAT 420

Query: 532 SYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHH--YQGWITFRIY------- 582
              S   P   +     LV  V      S+G  I G +  H  ++G    R Y       
Sbjct: 421 LMLSDFVPKQHQGIAASLVSTVV-NYSISIGLGIAGTVETHLNHKGVDLIRGYRSAWYMG 479

Query: 583 -GIGSLVCCALHLTV 596
            G G L  C   LTV
Sbjct: 480 TGFGGLGVCVAILTV 494


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 2/104 (1%)

Query: 477 GYILKKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYPTMTSYASI 536
           G     +G   ++ + +F F +   L     N  W++    +QG+  G     +    S 
Sbjct: 152 GVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISD 211

Query: 537 VSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQ-GWITF 579
           ++P  T     G++   + G     G  IGG +       WI F
Sbjct: 212 ITPLRTRPMYSGILATAW-GAALVAGPIIGGAICQRTTWRWIFF 254


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 7/102 (6%)

Query: 475 VSGYILKKVGHVKMM---SLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYPTMT 531
           +SG+++K+ G  KM+   S+ ++  G+  I+   + +  +  P+ +L  I  GM    +T
Sbjct: 405 LSGFLMKRFGRFKMLLMISVPMYVLGILGIILFGINDNHYTRPL-VLVLILAGMGGGLLT 463

Query: 532 SYASIVSPPGTETTIQGL---VGAVFEGVGASLGSFIGGQLY 570
             A I     +     G+   +   F  VG + GS I G ++
Sbjct: 464 LSAQIAVQSVSSHAKLGMNLTLYLTFSSVGGAFGSAIAGGVW 505


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 16/40 (40%), Positives = 24/40 (60%)

Query: 426 LCTGLLWNFLFWLLEDVSRLSCDSVMYIKTLQGLVSAIQT 465
           +CTG   N LF LLE+V+  + DS   +K    L+S I++
Sbjct: 645 VCTGEDANCLFHLLENVNVTAFDSDYTLKPFNQLMSFIES 684


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 286 CYPKTSN---DEPFPSKLSFTATLKLSSMISVENCVYIKLKNIIMDN 329
           CY ++SN   DEP PS   F    +LS  I +     ++L  I+M+N
Sbjct: 539 CYTESSNVSNDEPHPS---FEYVSRLSQYIYLLRIALVRLYTILMEN 582


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 83  VPHNRPKINVELNCGPAGTVLTSCYKDSPSLDCKIQATGDLNVTST 128
           VP N+  +N   N GP G + +   K++ S+  K+Q   +L+VTS+
Sbjct: 98  VPENQEAMN--FNEGPTG-ISSIASKNNSSITSKLQNNSNLSVTSS 140


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 144  VCEYWHLPQYCYSNTDRIRYTSHVTNVTLK 173
            +C YW  P+ C  + +RIR    V N  LK
Sbjct: 1103 ICLYWAAPENCRPSLNRIRDIVIVDNSHLK 1132


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 558 GASLGSFIGGQLYHHYQG--WITFRIYGIGSLVC 589
           GAS+GS IG  LY H++   W+   + G   ++C
Sbjct: 226 GASIGSPIGEALYDHWRWFYWMNMIVGGFFVILC 259


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,745
Number of Sequences: 5004
Number of extensions: 125038
Number of successful extensions: 394
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 15
length of query: 618
length of database: 2,362,478
effective HSP length: 77
effective length of query: 541
effective length of database: 1,977,170
effective search space: 1069648970
effective search space used: 1069648970
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)