GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000578-TA|BGIBMGA000578-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (618 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical ...    99   1e-20
AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical ...    35   0.19 
U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical pr...    32   1.0  
U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical pr...    32   1.0  
AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical ...    32   1.0  
Z48055-8|CAA88135.1|  573|Caenorhabditis elegans Hypothetical pr...    32   1.4  
Z48055-2|CAA88134.1|  544|Caenorhabditis elegans Hypothetical pr...    32   1.4  
Z36282-3|CAA85289.1|  573|Caenorhabditis elegans Hypothetical pr...    32   1.4  
AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical ...    30   4.2  
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    30   4.2  
Z22177-6|CAA80150.1|  576|Caenorhabditis elegans Hypothetical pr...    30   5.5  
AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.      30   5.5  
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   9.7  
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr...    29   9.7  
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ...    29   9.7  
AC090999-19|AAK26156.1|  575|Caenorhabditis elegans Hypothetical...    29   9.7  

>AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical
           protein R13A5.9 protein.
          Length = 630

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 9/193 (4%)

Query: 409 LTSLPTFVFMMWTVAVGLCTGLLWNFLFWLLEDVSRLSCDSVMYIKTLQGLVSAIQTFFG 468
           L S+   +F +  V +G   GL+++FL+W L+D+       V++     G++S +     
Sbjct: 380 LASMHILLFFVSVVVMGGGAGLVFSFLYWHLQDIGG---SPVLF-----GILSVVNHASE 431

Query: 469 EIPFLFVSGYILKKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYP 528
            I + +V   ++ K GHV++M L L     RF+  S L N W +LP+++LQG      + 
Sbjct: 432 IITYFYVFK-LINKYGHVRVMYLCLAVNFFRFMALSILDNPWMVLPLQILQGACLATVWS 490

Query: 529 TMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQGWITFRIYGIGSLV 588
             +SY S+V+PP  +   Q  +   + G+G  LGS IGG +        TF IYG+  L 
Sbjct: 491 CASSYISLVAPPHAKQHAQYALQVGYHGIGKGLGSIIGGSVISIIGTRTTFVIYGLICLA 550

Query: 589 CCALHLTVQYVFK 601
            CA    +  +FK
Sbjct: 551 TCAGSFGLNKLFK 563



 Score = 40.3 bits (90), Expect = 0.004
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 10/70 (14%)

Query: 334 AQYGKQRLWGSVGWGIFSFLTGFLI---DTF-------SDGAYKDYTVAFVLMFVFMMGD 383
           A++GK RL  SVGWG   F+ G  +   DTF        +   K+YT+ FV+  +FM+  
Sbjct: 258 AEFGKIRLMASVGWGFAMFIMGIALDYSDTFRNHPCPAENTTEKNYTLCFVMCVIFMLAA 317

Query: 384 VIVSCFLKTD 393
           + ++   K D
Sbjct: 318 MGLASKFKFD 327


>AF077539-1|AAK84580.2|  550|Caenorhabditis elegans Hypothetical
           protein T25D3.4 protein.
          Length = 550

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 33/145 (22%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 434 FLFWLLEDVSRLSCDSVMYIKTLQGLV-SAIQTFFGEIPFLFV---SGYI---LKKVGHV 486
           FL +L E   + SC  V Y+K + G    A+  + G +  L V   +G++     + G  
Sbjct: 297 FLSYLPES-GQFSCFFV-YLKLVVGFSPEAVAMYIGLVGILSVVAQTGFLHCLTSRFGTK 354

Query: 487 KMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGITFGMFYPTMTSYASIVSPPGTETTI 546
             ++L L    ++   Y   T  W +    +L  ++  + YP+++++ SI+S    + T+
Sbjct: 355 HTITLGLIFQLIQLTWYGLGTQYWMMWSAGVLAAMS-SITYPSISAFVSILSDKDKQGTV 413

Query: 547 QGLVGAVFEGVGASLGSFIGGQLYH 571
           QG++  +  G+    G  + G +++
Sbjct: 414 QGVITGI-RGLCTGFGPALFGTVFY 437


>U67949-9|AAM69108.1|  486|Caenorhabditis elegans Hypothetical
           protein F55A4.8b protein.
          Length = 486

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 463 IQTFFGEIPFLFVSGYILKKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGIT 522
           I   FG+   +F+    +  VG + +  +    FG    L S  T  W+ + + +L+ + 
Sbjct: 136 ISPLFGKY-IIFIGARTMFIVG-IAVTGVTAILFGFLNFLPSGNTFFWFSVLVRILEAVG 193

Query: 523 FGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQGWITFRIY 582
              F  +  + A+  S P     + G++   F G+G + G  IGG  Y      + F + 
Sbjct: 194 DAAFVTSSFAIAA-KSFPKNVAFVVGIL-ETFAGLGYTAGPVIGGFFYDIGGFQLPFLVL 251

Query: 583 GIGSLVCCAL 592
           GI  LV   L
Sbjct: 252 GIVLLVASVL 261


>U67949-8|AAD32274.1|  626|Caenorhabditis elegans Hypothetical
           protein F55A4.8a protein.
          Length = 626

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 4/130 (3%)

Query: 463 IQTFFGEIPFLFVSGYILKKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGIT 522
           I   FG+   +F+    +  VG + +  +    FG    L S  T  W+ + + +L+ + 
Sbjct: 276 ISPLFGKY-IIFIGARTMFIVG-IAVTGVTAILFGFLNFLPSGNTFFWFSVLVRILEAVG 333

Query: 523 FGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQGWITFRIY 582
              F  +  + A+  S P     + G++   F G+G + G  IGG  Y      + F + 
Sbjct: 334 DAAFVTSSFAIAA-KSFPKNVAFVVGIL-ETFAGLGYTAGPVIGGFFYDIGGFQLPFLVL 391

Query: 583 GIGSLVCCAL 592
           GI  LV   L
Sbjct: 392 GIVLLVASVL 401


>AC024809-1|AAF59542.4|  519|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.7a protein.
          Length = 519

 Score = 32.3 bits (70), Expect = 1.0
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 515 IEMLQGITFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQ 574
           I M  GI F +F+PT+  + + V P  +  +  G + A F  VG  L S + G   +  +
Sbjct: 54  IGMFCGIQFSIFFPTLWPFLNTVDPTAS-ASFFGFITAAF-SVGQGLASPVFGYWMNKAK 111

Query: 575 GWITFRIYGIGSLVCCALHLTVQYVFKDKIQR 606
                 ++GI  ++   +       F +K +R
Sbjct: 112 SVRQPLVFGISVMILSNIIFCFVEAFAEKERR 143


>Z48055-8|CAA88135.1|  573|Caenorhabditis elegans Hypothetical
           protein K10G9.1 protein.
          Length = 573

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 466 FFGEIPFLFVSGYILKKVGHVKMMSL-VLFAFGVRFILYSFLT----NAWWILPIEMLQG 520
           F+G       +G I  K    K+  L +LFA  +  +    L        +++ I+++QG
Sbjct: 106 FYGYAASQIPAGVIAAKFAPNKLFMLGILFASLLNIVTAICLNFHPFTDIFVMVIQVMQG 165

Query: 521 ITFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEG--VGASLGSFIGGQLYHHYQGWIT 578
           +  G+ YP M       +PP   +    L    F G  VG  +G      L  H+     
Sbjct: 166 LALGVCYPAMHGVWKYWAPPLERSK---LATTTFTGASVGVMVGLPASAYLVSHFSWSTP 222

Query: 579 FRIYGIGSLVCCALHLTV 596
           F ++G   +V   L + V
Sbjct: 223 FYVFGALGIVWSILWIYV 240


>Z48055-2|CAA88134.1|  544|Caenorhabditis elegans Hypothetical
           protein T07A5.3 protein.
          Length = 544

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 511 WILPIEMLQGITFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLY 570
           +++ ++ +QG+  G+ YP M       +PP  E +           VG   G      L 
Sbjct: 156 FVMVVQAVQGLALGVLYPAMHGVWKFWAPP-LERSKLATTAFTGSSVGVMTGLPASAYLV 214

Query: 571 HHYQGWITFRIYGIGSLV 588
            H+     F ++G+  ++
Sbjct: 215 SHFSWSTPFYVFGVVGII 232


>Z36282-3|CAA85289.1|  573|Caenorhabditis elegans Hypothetical
           protein K10G9.1 protein.
          Length = 573

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 10/138 (7%)

Query: 466 FFGEIPFLFVSGYILKKVGHVKMMSL-VLFAFGVRFILYSFLT----NAWWILPIEMLQG 520
           F+G       +G I  K    K+  L +LFA  +  +    L        +++ I+++QG
Sbjct: 106 FYGYAASQIPAGVIAAKFAPNKLFMLGILFASLLNIVTAICLNFHPFTDIFVMVIQVMQG 165

Query: 521 ITFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEG--VGASLGSFIGGQLYHHYQGWIT 578
           +  G+ YP M       +PP   +    L    F G  VG  +G      L  H+     
Sbjct: 166 LALGVCYPAMHGVWKYWAPPLERSK---LATTTFTGASVGVMVGLPASAYLVSHFSWSTP 222

Query: 579 FRIYGIGSLVCCALHLTV 596
           F ++G   +V   L + V
Sbjct: 223 FYVFGALGIVWSILWIYV 240


>AF022979-9|AAB69904.1|  466|Caenorhabditis elegans Hypothetical
           protein T02B11.6 protein.
          Length = 466

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 462 AIQTFFGEIPFLFVSGYILKKVGHVKMMSLVLFAFGVRFILYSFLTNAWWILPIEMLQGI 521
           AI T  G +P+ ++  Y+     +V + + ++         ++   + W +L I ++QGI
Sbjct: 82  AIGTIIGTVPYNWM--YVKYGAKNVFLSAGIISLVATSCTPFAAGNSYWLLLAIRLIQGI 139

Query: 522 TFGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEGVGASLGSFIGGQLYHHYQGW-ITFR 580
            +   +  +     +   P  E      V  VF      + + + G L     GW  +F 
Sbjct: 140 AYAADF-AVIGIICVKWAPHDEVAFFVSVLTVFSPFATVITTAVTGFLCTSSLGWRFSFY 198

Query: 581 IYGIGSLVCCAL 592
           ++ I   +C  L
Sbjct: 199 VHSIAGALCFVL 210


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
           family protein 2 protein.
          Length = 1551

 Score = 30.3 bits (65), Expect = 4.2
 Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 22/145 (15%)

Query: 291 SNDEPFPS--KLSFTATL--KLSSMISVENCVYIKLKNIIMDNGTEVAQYGKQRLWGS-- 344
           +  EP+P   K +F   L   L  +IS      + +KNI+ +   ++ +  +    G   
Sbjct: 55  AQQEPYPCTVKDTFNVALFMPLFLLISFIFPSALLVKNIVYEKEQKIKEQMRAMGLGDAV 114

Query: 345 --VGWGIFSFLTGFL----IDTFSDGA----YKDYTVAFVLMFVFMMGDVIVSCFLKTDS 394
             + WG+ S +  F+    I   S  A    Y DYT+   ++ +F+   + +S F  T  
Sbjct: 115 HFISWGLISLVLNFISVLIISIISKVAKIFDYTDYTLLLFVLILFLFSSIAMSIFFSTLF 174

Query: 395 TKMSLNILGDVGTLLTSLPTFVFMM 419
           T        ++ T  T +  FVF +
Sbjct: 175 TN------ANIATAATCVLWFVFFI 193


>Z22177-6|CAA80150.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK512.6 protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 8/138 (5%)

Query: 466 FFGEIPFLFVSGYILKKVGHVKMMS--LVLFAFGVRFILYSFLTNAWWILP-IEMLQGIT 522
           F+G +     +G++  K    K+    + + AF    + Y F   + +++  I++ QG+ 
Sbjct: 128 FYGYLVTQIPAGFLAAKFPPNKLFGFGIGVGAFLNILLPYGFKVKSDYLVAFIQITQGLV 187

Query: 523 FGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEG--VGASLGSFIGGQLYHHYQGWITFR 580
            G+ YP M       +PP   +    L    F G   GA LG  +   L  +      F 
Sbjct: 188 QGVCYPAMHGVWRYWAPPMERSK---LATTAFTGSYAGAVLGLPLSAFLVSYVSWAAPFY 244

Query: 581 IYGIGSLVCCALHLTVQY 598
           +YG+  ++   L   V +
Sbjct: 245 LYGVCGVIWAILWFCVTF 262


>AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.
          Length = 563

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 8/138 (5%)

Query: 466 FFGEIPFLFVSGYILKKVGHVKMMS--LVLFAFGVRFILYSFLTNAWWILP-IEMLQGIT 522
           F+G +     +G++  K    K+    + + AF    + Y F   + +++  I++ QG+ 
Sbjct: 115 FYGYLVTQIPAGFLAAKFPPNKLFGFGIGVGAFLNILLPYGFKVKSDYLVAFIQITQGLV 174

Query: 523 FGMFYPTMTSYASIVSPPGTETTIQGLVGAVFEG--VGASLGSFIGGQLYHHYQGWITFR 580
            G+ YP M       +PP   +    L    F G   GA LG  +   L  +      F 
Sbjct: 175 QGVCYPAMHGVWRYWAPPMERSK---LATTAFTGSYAGAVLGLPLSAFLVSYVSWAAPFY 231

Query: 581 IYGIGSLVCCALHLTVQY 598
           +YG+  ++   L   V +
Sbjct: 232 LYGVCGVIWAILWFCVTF 249


>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 526  FYPTMTSYASIVSPPGTETTIQGL----VGAVFEGVGASLG-----SFIGGQL-YHHYQG 575
            FY T  SYA +  P  +   +QG+    +   ++GV    G     + +  QL Y +Y G
Sbjct: 1688 FYTTGESYAGVYLPGLSALLVQGIKSGDININYKGVSIGNGVIDKRTDMNSQLHYQYYHG 1747

Query: 576  WITFRIYGIGSLVCCA 591
             I+   Y     +CC+
Sbjct: 1748 GISATTYNTALQLCCS 1763


>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical protein
            Y16B4A.2 protein.
          Length = 2105

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 526  FYPTMTSYASIVSPPGTETTIQGL----VGAVFEGVGASLG-----SFIGGQL-YHHYQG 575
            FY T  SYA +  P  +   +QG+    +   ++GV    G     + +  QL Y +Y G
Sbjct: 1688 FYTTGESYAGVYLPGLSALLVQGIKSGDININYKGVSIGNGVIDKRTDMNSQLHYQYYHG 1747

Query: 576  WITFRIYGIGSLVCCA 591
             I+   Y     +CC+
Sbjct: 1748 GISATTYNTALQLCCS 1763


>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
            protein Y16B4A.2 protein.
          Length = 2105

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 526  FYPTMTSYASIVSPPGTETTIQGL----VGAVFEGVGASLG-----SFIGGQL-YHHYQG 575
            FY T  SYA +  P  +   +QG+    +   ++GV    G     + +  QL Y +Y G
Sbjct: 1688 FYTTGESYAGVYLPGLSALLVQGIKSGDININYKGVSIGNGVIDKRTDMNSQLHYQYYHG 1747

Query: 576  WITFRIYGIGSLVCCA 591
             I+   Y     +CC+
Sbjct: 1748 GISATTYNTALQLCCS 1763


>AC090999-19|AAK26156.1|  575|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.16a protein.
          Length = 575

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 10/171 (5%)

Query: 435 LFWLLEDVSRLSCDSVMYIKTLQG--LVSAIQTFFGEIPFLFVSGYILKKVGHVKMMSLV 492
           +F+L   +S +     M    L G   V+ I   F EIP LF+   ++ ++G   +++  
Sbjct: 371 VFFLWPVISMVYYGMAMKANVLGGDIYVNFIFAAFVEIPALFIVYLLIDRIGRRLILAGG 430

Query: 493 LFAFGVRFILYSFL---TNAWW-ILPIEMLQGITFGMFYPTMTSYASIVSPPGTETTIQG 548
           LF  G   ++   +      W  I  +   +G   G+ Y  + +Y+  + P     T  G
Sbjct: 431 LFIAGACLLVNWLMGDNVQLWMAITQMAFTKGSITGV-YAAIYTYSPELFPTVIRNTAMG 489

Query: 549 LVGAVFEGVGASLGSFIGGQLYHHYQGWITFRIYGIGSLVCCALHLTVQYV 599
               +   VGA   S+I   +   + G + F I   G +   A  +T+ ++
Sbjct: 490 FCSTIAR-VGAIAASYISMWIAEQF-GKV-FMIIPFGCMAVLAAVMTLLFL 537


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.140    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,740,385
Number of Sequences: 27539
Number of extensions: 696956
Number of successful extensions: 2042
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2034
Number of HSP's gapped (non-prelim): 18
length of query: 618
length of database: 12,573,161
effective HSP length: 86
effective length of query: 532
effective length of database: 10,204,807
effective search space: 5428957324
effective search space used: 5428957324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)