Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000577-TA|BGIBMGA000577-PA|IPR000595|Cyclic
nucleotide-binding, IPR005821|Ion transport
         (540 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...   149   8e-38
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...   139   6e-35
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    47   5e-07
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.69 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    26   0.91 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   8.5  

>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score =  149 bits (360), Expect = 8e-38
 Identities = 107/404 (26%), Positives = 199/404 (49%), Gaps = 28/404 (6%)

Query: 1   MVKDAKMLRHHYLKSSSWKY-DLLSLIPTDIAYYWWPP-----GSCDHMH-------LPC 47
           ++ D K++  HYL++  W + DL+S IP D  +  +        S   +H       L  
Sbjct: 153 VILDPKLIAKHYLRT--WFFLDLISSIPLDYIFLIFNQFQDFSESFQILHAGRALRILRL 210

Query: 48  PVIVRLNRLLRLPRMWEWFDRTETA--TSYPNAF-RICKVVMAILVLIHWNACLYFAISY 104
             ++ L RLLRL R+  +  + E     +  + F RI  ++  +L++ HW+ CL F +  
Sbjct: 211 AKLLSLVRLLRLSRLVRYVSQWEEVYFLNMASVFMRIFNLICMMLLIGHWSGCLQFLVPM 270

Query: 105 AIGFGTDNWVYNLTGSRNGSLTHQYIYSFYWSTLTLTTIGETPQPEKDAEYLFV-VADFL 163
             GF +++WV  +   ++     QY ++ + +   +  IG    P +    +++ +   +
Sbjct: 271 LQGFPSNSWVA-INELQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSLTDMWLTMLSMI 329

Query: 164 AGVLIFATIVGNIGSMISNMNVARVEFQNKMDGVKQYMAFRKVSGELEARVIRWFAYTWA 223
           +G   +A  +G+  ++I +++ +R +++ K+  V++YMA+RK+  E+  R+  +F + + 
Sbjct: 330 SGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRITEYFEHRY- 388

Query: 224 QSGALDEENVLSSLPDKLKAEIAIRVHLDTLREVRIFQDCEPGXXXXXXXXXXXQVFSPG 283
           Q    DEE +L  L +KL+ ++        +  V  F + +             +VF PG
Sbjct: 389 QGKFFDEELILGELSEKLREDVINYNCRSLVASVPFFANADSNFVSDVVTKLRYEVFQPG 448

Query: 284 DYICRKGDVGKEMYIVKRGRLQVVADDGKTVLATLSAGSVFGEVSVLEIAGNRTGNRRTA 343
           D I ++G +G +MY ++ G + +V  +G+ V  +LS GS FGE+ +L      T  RR A
Sbjct: 449 DIIIKEGTIGSKMYFIQEGIVDIVMANGE-VATSLSDGSYFGEICLL------TNARRVA 501

Query: 344 NVRALGYSDLFCLAKRDLWEALGDYPDARNTLTERGCQLLRKDG 387
           +VRA  Y +LF L+       L  YP  R T+     + L K G
Sbjct: 502 SVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIG 545


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score =  139 bits (336), Expect = 6e-35
 Identities = 83/309 (26%), Positives = 157/309 (50%), Gaps = 10/309 (3%)

Query: 80  RICKVVMAILVLIHWNACLYFAISYAIGFGTDNWVYNLTGSRNGSLTHQYIYSFYWSTLT 139
           RI  ++  +L++ HW+ CL F +    GF +++WV  +   ++     QY ++ + +   
Sbjct: 278 RIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSWVA-INELQDSFWLEQYSWALFKAMSH 336

Query: 140 LTTIGETPQPEKDAEYLFV-VADFLAGVLIFATIVGNIGSMISNMNVARVEFQNKMDGVK 198
           +  IG    P +    +++ +   ++G   +A  +G+  ++I +++ +R +++ K+  V+
Sbjct: 337 MLCIGYGRFPPQSLTDMWLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVE 396

Query: 199 QYMAFRKVSGELEARVIRWFAYTWAQSGALDEENVLSSLPDKLKAEIAIRVHLDTLREVR 258
           +YMA+RK+  E+  R+  +F + + Q    DEE +L  L +KL+ ++        +  V 
Sbjct: 397 EYMAYRKLPREMRQRITEYFEHRY-QGKFFDEELILGELSEKLREDVINYNCRSLVASVP 455

Query: 259 IFQDCEPGXXXXXXXXXXXQVFSPGDYICRKGDVGKEMYIVKRGRLQVVADDGKTVLATL 318
            F + +             +VF PGD I ++G +G +MY ++ G + +V  +G+ V  +L
Sbjct: 456 FFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKMYFIQEGIVDIVMANGE-VATSL 514

Query: 319 SAGSVFGEVSVLEIAGNRTGNRRTANVRALGYSDLFCLAKRDLWEALGDYPDARNTLTER 378
           S GS FGE+ +L      T  RR A+VRA  Y +LF L+       L  YP  R T+   
Sbjct: 515 SDGSYFGEICLL------TNARRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESV 568

Query: 379 GCQLLRKDG 387
             + L K G
Sbjct: 569 AAERLNKIG 577


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 46.8 bits (106), Expect = 5e-07
 Identities = 23/51 (45%), Positives = 37/51 (72%), Gaps = 2/51 (3%)

Query: 280 FSPGDYICRKGDVGKEMYIVKRGRLQVVADDGKTVLATLSAGSVFGEVSVL 330
           FS G  I R+GDVG  +Y+++ G+++ V+ DGK  L+TL+ G V GE+++L
Sbjct: 123 FSAGSTIIREGDVGSIVYVMEEGKVE-VSRDGK-YLSTLAPGKVLGELAIL 171



 Score = 44.8 bits (101), Expect = 2e-06
 Identities = 57/212 (26%), Positives = 91/212 (42%), Gaps = 24/212 (11%)

Query: 156 LFVVADFLAGVLIFATIVGNIGSMISNMNVARVEFQNKMDG-VKQYMAFRKVSGELEA-- 212
           L V   F AG  I     G++GS++  M   +VE     DG     +A  KV GEL    
Sbjct: 117 LHVSCSFSAGSTIIRE--GDVGSIVYVMEEGKVEVSR--DGKYLSTLAPGKVLGELAILY 172

Query: 213 ---RVIRWFAYTWAQSGALDEENVLSSLPDKLKAEIAIRV-HLDTLREVRIFQDCEPGXX 268
              R     A T  Q  A+D +   + +   ++  ++ +  + D L+ V IF++      
Sbjct: 173 NCKRTATITAATDCQLWAIDRQCFQTIM---MRTGLSRQAEYTDFLKSVPIFKNLPEETL 229

Query: 269 XXXXXXXXXQVFSPGDYICRKGDVGKEMYIVKRGRLQVVADDGKT----VLATLSAGSVF 324
                      ++ GDYI R+G  G   +I+ RG+++V      T     + TLS G  F
Sbjct: 230 IKISDVLEETFYNNGDYIIRQGARGDTFFIISRGQVRVTIKQPDTPEEKYIRTLSKGDFF 289

Query: 325 GEVSVLEIAGNRTGNRRTANVRALGYSDLFCL 356
           GE ++      +  + RTAN+ A     + CL
Sbjct: 290 GEKAL------QGDDLRTANIIADDPEGVSCL 315


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 26.2 bits (55), Expect = 0.69
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 142 TIGETPQPEKDAEYLFVV-ADFLAGVLIFATIVGNI 176
           T G+  QPE     L V+   FL  +LIF ++ GNI
Sbjct: 9   TDGKEDQPENTFSLLSVLLVGFLFLILIFLSVAGNI 44


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 8/28 (28%), Positives = 17/28 (60%)

Query: 9   RHHYLKSSSWKYDLLSLIPTDIAYYWWP 36
           + H+L+  S+  D+ ++I T   + +WP
Sbjct: 198 KEHHLEGPSYNSDIFAMIGTIFLWLFWP 225


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 84  VVMAILVLIHWNACLYFAISYAIGFGTD 111
           ++M  +V I      Y+A  +A+ FGTD
Sbjct: 64  IMMKNVVDIVLGGLTYWAFGFAMSFGTD 91


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,389
Number of Sequences: 429
Number of extensions: 6113
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 7
length of query: 540
length of database: 140,377
effective HSP length: 61
effective length of query: 479
effective length of database: 114,208
effective search space: 54705632
effective search space used: 54705632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)