GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000577-TA|BGIBMGA000577-PA|IPR000595|Cyclic
nucleotide-binding, IPR005821|Ion transport
         (540 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    24   2.3  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    23   7.1  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    23   7.1  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    23   7.1  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 5/76 (6%)

Query: 311 GKTVLATLSAGSVFGEVSVLEIAGNRTGNRRTANVRALGYSDLFCLAKRDLWEALGDYPD 370
           GKT   TLS+ S     + ++ AGN    + T     LGY+++  L K   W+ + D   
Sbjct: 264 GKTF--TLSSASNAKLGAPVKGAGN--SGKYTGEAGMLGYNEIVELQKEGGWKVVWD-DT 318

Query: 371 ARNTLTERGCQLLRKD 386
            +NT   +G Q +  D
Sbjct: 319 QKNTHMYKGDQWVAFD 334


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 128 QYIYSFYWSTLTLTTIGETPQPEKDAEYLFVVADFLAGVLIFATI 172
           Q I+ +Y    TL  +G     E   EY+ + + F+   L+FAT+
Sbjct: 111 QLIHVYYTVVFTLL-LGVDFVKEYAFEYIQLYSQFILYFLLFATL 154


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 128 QYIYSFYWSTLTLTTIGETPQPEKDAEYLFVVADFLAGVLIFATI 172
           Q I+ +Y    TL  +G     E   EY+ + + F+   L+FAT+
Sbjct: 111 QLIHVYYTVVFTLL-LGVDFVKEYAFEYIQLYSQFILYFLLFATL 154


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 128 QYIYSFYWSTLTLTTIGETPQPEKDAEYLFVVADFLAGVLIFATI 172
           Q I+ +Y    TL  +G     E   EY+ + + F+   L+FAT+
Sbjct: 431 QLIHVYYTVVFTLL-LGVDFVKEYAFEYIQLYSQFILYFLLFATL 474


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,842
Number of Sequences: 317
Number of extensions: 4744
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 4
length of query: 540
length of database: 114,650
effective HSP length: 60
effective length of query: 480
effective length of database: 95,630
effective search space: 45902400
effective search space used: 45902400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)