Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000576-TA|BGIBMGA000576-PA|undefined
         (51 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    27   0.40 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   0.92 
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    25   1.6  
SPBC409.21 |sec66||ER protein translocation subcomplex subunit S...    23   4.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    23   6.5  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    22   8.6  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.6 bits (56), Expect = 0.40
 Identities = 9/25 (36%), Positives = 20/25 (80%), Gaps = 1/25 (4%)

Query: 24  MTPLMMELFGEEYQRNIRGEYGDEE 48
           ++P++M+ FG++ Q+ ++  YG+EE
Sbjct: 335 LSPILMDSFGDDLQK-LKETYGEEE 358


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 0.92
 Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)

Query: 13  RFRERRETI--VLMTPLMMELFGEEYQ 37
           +FR  +ETI   ++TP +M++F E YQ
Sbjct: 217 QFRSYKETIHAPVITPKIMDIFFENYQ 243


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 25  TPLMMELFGEEYQRNIRGEYGDEEDRR 51
           T +  + F +EY+ NIR  YG E +R+
Sbjct: 336 TNVTEDKFNKEYRYNIRHTYGLEGNRK 362


>SPBC409.21 |sec66||ER protein translocation subcomplex subunit
          Sec66 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 26 PLMMELFGEEYQRNI 40
          P+  E FGE Y RNI
Sbjct: 35 PVSEEWFGENYSRNI 49


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 31  LFGEEYQRNIRGEYGDEEDRR 51
           L  +EY RNI  ++ ++ DRR
Sbjct: 704 LIDKEYTRNILFQFLEQRDRR 724


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
          Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 24 MTPLMMELFGEEYQRNIRGEYGDEE 48
          M  L MELFG +  R+    YG+++
Sbjct: 46 MELLSMELFGSQASRSRAFYYGEDK 70


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.144    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,171
Number of Sequences: 5004
Number of extensions: 5422
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 51
length of database: 2,362,478
effective HSP length: 32
effective length of query: 19
effective length of database: 2,202,350
effective search space: 41844650
effective search space used: 41844650
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)