Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000576-TA|BGIBMGA000576-PA|undefined
         (51 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  

>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 23   LMTPLMMELFGEEYQRNIRGEYGDE 47
            L  P  M   GEE + +I  EYGD+
Sbjct: 1172 LAVPFTMNAEGEEPEMHIHQEYGDD 1196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.144    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,652
Number of Sequences: 59808
Number of extensions: 41791
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 1
length of query: 51
length of database: 16,821,457
effective HSP length: 31
effective length of query: 20
effective length of database: 14,967,409
effective search space: 299348180
effective search space used: 299348180
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)