Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000576-TA|BGIBMGA000576-PA|undefined
         (51 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21620.1 68414.m02706 pumilio/Puf RNA-binding domain-containi...    25   4.6  
At5g63190.2 68418.m07934 MA3 domain-containing protein low simil...    25   6.1  
At5g63190.1 68418.m07933 MA3 domain-containing protein low simil...    25   6.1  

>At1g21620.1 68414.m02706 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 308

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 16  ERRETIVLMTPLMMELFGEEYQRNIRGEYGD 46
           E +E++V++   +ME  G+   R  R EYG+
Sbjct: 228 ETKESMVVVVEELMECEGDMLMRLARNEYGN 258


>At5g63190.2 68418.m07934 MA3 domain-containing protein low
           similarity to programmed cell death 4 protein [Gallus
           gallus] GI:12958564; contains Pfam profile PF02847: MA3
           domain
          Length = 702

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 2   LTKILCWVLGERFRERRETIVLMTPLMMELFGEE 35
           L +++   L  + RE+    VL++ L MELF  E
Sbjct: 458 LKRLITLALDRKNREKEMASVLLSALHMELFSTE 491


>At5g63190.1 68418.m07933 MA3 domain-containing protein low
           similarity to programmed cell death 4 protein [Gallus
           gallus] GI:12958564; contains Pfam profile PF02847: MA3
           domain
          Length = 702

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 2   LTKILCWVLGERFRERRETIVLMTPLMMELFGEE 35
           L +++   L  + RE+    VL++ L MELF  E
Sbjct: 458 LKRLITLALDRKNREKEMASVLLSALHMELFSTE 491


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.144    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,184,044
Number of Sequences: 28952
Number of extensions: 31827
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 12,070,560
effective HSP length: 32
effective length of query: 19
effective length of database: 11,144,096
effective search space: 211737824
effective search space used: 211737824
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)